Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060408.seq
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   2.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   2.3  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    24   9.3  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.3  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  STISKRKTMRPKP*NLTRIMSKAFLGEVR 185
           ST+SK+      P   T   SK+F+GEV+
Sbjct: 505 STLSKKVVENTSPLKYTHSASKSFIGEVQ 533


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 445  DPPLSHFLPYHVYLRFSSLSLHLLPR 368
            DPP   +L Y +YL   +  LH +P+
Sbjct: 1059 DPPPKPYLSYKMYLNDFTRQLHYIPK 1084


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 146 QISGLWSHGLSLRNGGLESPSSKLERGSDELT 51
           Q+  L++  ++ RN G+ SP+++L    DEL+
Sbjct: 18  QVRKLYNSFMAARNSGVLSPNTELTYAIDELS 49


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 28  NKSY*NTPV--SSSEPRSSLLEGDSNPPFRSERPCDQS 135
           N+S+ + P   S SE + S +   SNPPF +E   D +
Sbjct: 606 NQSHISPPQVDSQSEYKESSILAPSNPPFETESITDST 643


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  PNKSY*NTPVSSSEPRSSLLEGDSNPPFRSE 117
           PN+S  NTPV ++ P +      S P  RSE
Sbjct: 235 PNRSATNTPVENTHPENP-DSNTSTPTTRSE 264


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 327 LFLFPLLFLYCSSTDYYLIGCC 262
           L +F  L  Y +  D  L+GCC
Sbjct: 334 LLIFSYLTRYLTDRDIILLGCC 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,812
Number of Sequences: 5004
Number of extensions: 26984
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)