Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060408.seq
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 38 0.003
12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223... 38 0.005
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248... 37 0.006
02_03_0280 - 17256524-17256733,17256838-17256958,17257318-172574... 36 0.011
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 36 0.015
11_01_0294 + 2212807-2212876,2213664-2213843,2214505-2214594,221... 35 0.034
03_03_0065 + 14192725-14192813,14193004-14193088,14193971-141940... 34 0.045
09_01_0128 + 1932721-1935181,1936099-1936256 32 0.24
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 29 1.7
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 29 2.3
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 27 5.2
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 27 6.9
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 27 9.1
11_06_0261 - 21765167-21765373,21765828-21766097,21767330-217673... 27 9.1
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = +2
Query: 11 ETAENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXX 190
E + Q+K +++ + +LN A LK+ + +A+ TK L+ D NVK L+RR
Sbjct: 449 EDEKKQSKQLKV--TCNLNNAACKLKLKD--YKQAEKLCTKVLELDSQNVKALYRRAQAY 504
Query: 191 XXXXXXXXXXKDFQKIIEIEPRTKQ 265
D +K +EI+P +Q
Sbjct: 505 MQLADLELAEVDIKKALEIDPDNRQ 529
>12_01_0295 +
2235209-2235263,2236182-2236361,2236478-2236567,
2236947-2237131,2237200-2237358,2237437-2237589,
2237938-2238264
Length = 382
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/77 (32%), Positives = 33/77 (42%)
Frame = +2
Query: 35 AIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXX 214
A+ + HLN+A +K+ EA T L DENNVK LFRR
Sbjct: 244 ALAVKNPCHLNMAACLIKLKRFD--EAIAQCTIVLSEDENNVKALFRRGKARAELGQTES 301
Query: 215 XXKDFQKIIEIEPRTKQ 265
+DF K + P K+
Sbjct: 302 AREDFLKAKKYSPEDKE 318
>04_03_0532 -
16824394-16824447,16824545-16824665,16824748-16824875,
16825457-16825603,16825682-16825807,16825895-16826160,
16826259-16826453,16826577-16826657,16826756-16826830,
16827270-16827530,16827633-16827719,16827844-16828060
Length = 585
Score = 37.1 bits (82), Expect = 0.006
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +2
Query: 20 ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
+ Q+KA+++ S LN A LK+ + EA+ TK L+ + NVK L+RR
Sbjct: 452 KKQSKALKV--SCKLNNAACKLKLK--EYREAEKLCTKVLELESTNVKALYRRTQAYIEL 507
Query: 200 XXXXXXXKDFQKIIEIEP 253
D +K +EI+P
Sbjct: 508 ADLELAELDVKKALEIDP 525
>02_03_0280 -
17256524-17256733,17256838-17256958,17257318-17257445,
17257603-17257671,17257757-17257882,17257970-17258235,
17258341-17258535,17258614-17258694,17258729-17258851,
17258941-17259201,17260044-17260130,17260260-17260578
Length = 661
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 298 IEKQKRKEKQLYANMFDKFAK-HDNEVTGGETK 393
+++QKRKE +LY NM K +K D+E GG T+
Sbjct: 565 VKEQKRKETKLYGNMISKLSKLEDSETEGGTTQ 597
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 131 KALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEP 253
K L+ D NVK +RR D +K +EI+P
Sbjct: 509 KVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDP 549
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 35.9 bits (79), Expect = 0.015
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +2
Query: 11 ETAENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXX 190
+ A A +I + H N A+ +LK+ + E TKAL+ + + +K L RR
Sbjct: 239 QIAAELESAEDIRSACHSNRAVCFLKLGK--YDETIKECTKALELNPSYLKALLRRGEAH 296
Query: 191 XXXXXXXXXXKDFQKIIEIEPRTKQ 265
D +KIIE++P +Q
Sbjct: 297 EKLEHYDEAIADMKKIIELDPSNEQ 321
>11_01_0294 +
2212807-2212876,2213664-2213843,2214505-2214594,
2215054-2215238,2215399-2215521,2215593-2215745,
2216090-2216416
Length = 375
Score = 34.7 bits (76), Expect = 0.034
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 35 AIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXX 214
A+ + HLN+A +K+ EA + L DENNVK LFRR
Sbjct: 237 ALAVKNPCHLNMAACLIKLKRFD--EAIAQCSIVLAEDENNVKALFRRGKARAELGQTES 294
Query: 215 XXKDFQKIIEIEPRTKQ 265
+DF K + P K+
Sbjct: 295 AREDFLKAKKHSPEDKE 311
>03_03_0065 +
14192725-14192813,14193004-14193088,14193971-14194040,
14194730-14194827,14194931-14195101,14196192-14196224,
14196762-14196820,14197143-14197190,14197399-14197480,
14198317-14198475,14199036-14199093,14199801-14199949,
14200403-14200503,14200574-14200643,14201088-14201147,
14201883-14201939,14202247-14202315,14202485-14202562,
14202996-14203097,14203203-14203274,14203361-14203648
Length = 665
Score = 34.3 bits (75), Expect = 0.045
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 53 SVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQ 232
S+HLN+A Y K+ + ++ D K L+ + +VK L+RR KDF+
Sbjct: 488 SLHLNVAACYQKMG--EYRKSIDTCNKVLEANPVHVKALYRRGMSYMLLGDFDDAKKDFE 545
Query: 233 KIIEIE 250
K+I ++
Sbjct: 546 KMIAVD 551
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 31.9 bits (69), Expect = 0.24
Identities = 20/82 (24%), Positives = 31/82 (37%)
Frame = +2
Query: 8 GETAENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXX 187
GE + K + +H N A Y+ + P A + AL+ K L +R
Sbjct: 77 GEAIKLLPKEHNDIAFLHCNAAACYMHMNPEDLDHAIEECNLALEASPKYTKALLKRARC 136
Query: 188 XXXXXXXXXXXKDFQKIIEIEP 253
KD QK++ +EP
Sbjct: 137 FEALDKLDLACKDVQKVLSLEP 158
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 113 AKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEP 253
A A+KA++ D KG +RR KDFQ++ I P
Sbjct: 65 AVQDASKAIEIDARYSKGYYRRGAAYLAMGKFKEALKDFQQVKRISP 111
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 62 LNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKII 241
LNL YLK E + ++ L +D +NVK +RR D K
Sbjct: 378 LNLMACYLKTRNFE--ECINEGSEVLTYDSSNVKAYYRRGQAYKELGNLEAAVGDLSKAH 435
Query: 242 EIEP 253
E+ P
Sbjct: 436 ELSP 439
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 14 TAENQTKA-IEILLSVHLNLALVYLKVTPIHHF 109
T +N T+A + LL+VH LA + L++ HH+
Sbjct: 328 TCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHY 360
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 49 PVSSSEPRSSLLEGDSNPPFRSERPCDQSP 138
PVS+ +P S LL + PP R + P +P
Sbjct: 107 PVSTLDPSSFLLSSPTAPPPRPQAPSPTAP 136
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 128 SHGLSLRNGGLESPSSKLERGSDELT 51
+HG+SL +G + SS + SDEL+
Sbjct: 332 AHGMSLLDGSCDFGSSSFDSSSDELS 357
>11_06_0261 -
21765167-21765373,21765828-21766097,21767330-21767377,
21767472-21767600,21767701-21767961,21768072-21768164,
21768252-21768344,21769403-21769496,21769609-21770072
Length = 552
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 32 KAIEILLSVHLNLALVYLKVTPIHH 106
KAI LS HLNL ++ +V P HH
Sbjct: 506 KAIPSQLS-HLNLTHIWFRVIPYHH 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,123
Number of Sequences: 37544
Number of extensions: 174688
Number of successful extensions: 513
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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