Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060408.seq
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 34   0.062
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.081
SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)                  33   0.14 
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         33   0.14 
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)                 31   0.57 
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)                 30   1.0  
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)                 27   7.1  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   27   7.1  
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +2

Query: 20   ENQTKAIE-ILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXX 196
            E + KA++ I  + HLN+A  +LK+   ++F+      KAL  D+ N+K LFRR      
Sbjct: 1007 EEEEKAVDPIKCAGHLNIAACHLKLG--NNFKCIKACNKALDIDKENIKALFRRGKALLN 1064

Query: 197  XXXXXXXXKDFQKIIEIEPRTKQ 265
                    +DF +++E++P+ ++
Sbjct: 1065 LKDYEKSKEDFTQVLELDPKNRE 1087



 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 274  QIIVCRAAIEKQKRKEKQLYANMFDKFAK 360
            Q+ +    ++   +KEK+LY+N+F++ A+
Sbjct: 1091 QLKIVNGMLKDHHQKEKKLYSNIFERLAE 1119


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 33.9 bits (74), Expect = 0.062
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 104 HFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEP 253
           ++E   H +  L+ D++NVK LFRR               DF++  E++P
Sbjct: 289 YYEVIKHTSTVLEKDKDNVKALFRRAKAHKACWDPEEARSDFKRAAELDP 338


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 33.5 bits (73), Expect = 0.081
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 29  TKAIEILLSV---HLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
           T+AIE+   V   + N +  YLK T  +     D A KA++ D   +KG +RR       
Sbjct: 211 TQAIELKADVPAYYGNRSFCYLK-TEYYGLALAD-ANKAIQLDRKYIKGYYRRATANMAL 268

Query: 200 XXXXXXXKDFQKIIEIEPRTK 262
                  KD++ +++  P  K
Sbjct: 269 GKFKLSLKDYEMVVKFHPSDK 289


>SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)
          Length = 94

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +2

Query: 20  ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRR 178
           +N  K   I L  +LN A   LK+    +  A +   +ALK D N+ K LFRR
Sbjct: 30  DNAKKMAAIALPCYLNSAACKLKLA--EYPSAIEDCNEALKLDANSAKALFRR 80


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +2

Query: 20  ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRR 178
           +N  K   I L  +LN A   LK+    +  A +   +ALK D N+ K LFRR
Sbjct: 357 DNAKKMAAIALPCYLNSAACKLKLA--EYPSAIEDCNEALKLDANSAKALFRR 407


>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
          Length = 206

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +2

Query: 29  TKAIEI---LLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
           +KAIE    + + + N +  Y+ ++  ++ +A + A  +++ D N VKG +R        
Sbjct: 58  SKAIEFAPHVATFYGNRSAAYMMIS--NYDKALEDALLSIEIDNNFVKGHYRAAKCHLAM 115

Query: 200 XXXXXXXKDFQKIIEIEPRTK 262
                  ++ +K++E++P+ K
Sbjct: 116 GSASNALREIRKVLELDPKNK 136


>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
          Length = 455

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 56  VHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQK 235
           ++ N A   LK+   +    KD ATKAL    N+ K LFRR              KD + 
Sbjct: 55  IYKNRAACQLKLEK-YEAAIKD-ATKALDIVPNDPKALFRRSQAFEATGRLEEAFKDART 112

Query: 236 IIEIEPRTKQ 265
           +  +EP++++
Sbjct: 113 LSHLEPKSER 122


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 86  KVTPIHHFEAKDHATKALKFDENNVKGLFR 175
           +VT  H  E++ HAT  +  DE +V G+FR
Sbjct: 12  RVTLTHTHESELHATVCISTDELSVAGVFR 41


>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 26  QTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVK 163
           Q   +E L +  L      L+V  IHH  A D +  A    ENNVK
Sbjct: 187 QVTILEGLAASGLRSVRYALEVPGIHHVIANDISADAFSLIENNVK 232


>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
          Length = 234

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 408 ISALALCLSTCYLVVVLRKLVEHIRVQLFLFPLLFLYCSS 289
           I  L  C +TC    V+RK  + + +   LF L  L CS+
Sbjct: 67  IHFLVFCAATCCRRPVIRKRPKRLAILAILFCLSTLVCSA 106


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 80  YLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEPR 256
           Y  + P  +  A+  A  AL    +NVK L+RR              KD   +++I+ +
Sbjct: 758 YGSIPPSENDLAEKDANTALGLQPDNVKALYRRALARKALGKYDTAAKDLLSLVKIDSK 816


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 274 QIIVCRAAIEKQKRKEKQLYANMFDKFAKHDNEV 375
           QI  C AA+EKQKR+ K+   N +    K DN++
Sbjct: 40  QIESCTAALEKQKRQTKE-EENKY-SLLKRDNQL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,601
Number of Sequences: 59808
Number of extensions: 196610
Number of successful extensions: 494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)