Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060408.seq
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical pr...    37   0.006
U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated p...    31   0.29 
AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.     31   0.29 
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    29   2.0  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    29   2.0  
AL132948-2|CAC51076.2|  496|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical
           protein F31D4.3 protein.
          Length = 431

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +2

Query: 20  ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
           E   +   IL   +LNL+LV  K       E      K L+    NVK L+R+       
Sbjct: 293 EKMAERETILNGAYLNLSLVCSKQN--EQLECIKWCDKVLETKPGNVKALYRKATALLTM 350

Query: 200 XXXXXXXKDFQKIIEIEPRTK 262
                  K F+KI+E+EP  K
Sbjct: 351 NEVRDAMKLFEKIVEVEPENK 371



 Score = 33.5 bits (73), Expect = 0.072
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 274 QIIVCRAAIEKQKRKEKQLYANMFDKFAKHDNEVT 378
           QIIVCR  I +Q  ++K+ + N+F K +  +++ T
Sbjct: 376 QIIVCRNTIREQNERDKKRFKNLFAKISTEEDKPT 410


>U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated
           protein 45 protein.
          Length = 961

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 113 AKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEPRTK 262
           A+   TKAL+FD  +VK LFRR              +D ++ + + P  K
Sbjct: 66  AQSDCTKALEFDGADVKALFRRSLAREQLGNVGPAFQDAKEALRLSPNDK 115


>AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.
          Length = 961

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 113 AKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEPRTK 262
           A+   TKAL+FD  +VK LFRR              +D ++ + + P  K
Sbjct: 66  AQSDCTKALEFDGADVKALFRRSLAREQLGNVGPAFQDAKEALRLSPNDK 115


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 447 PIPHSPTFSPITSISALALCLSTCYLVVVLRKLVEHIRVQ 328
           P P SP + P++S+S+ +  LST     +LR + + I V+
Sbjct: 596 PTPTSPIYRPLSSLSSFSRKLSTVVRRSILRPISDIIPVR 635


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 447 PIPHSPTFSPITSISALALCLSTCYLVVVLRKLVEHIRVQ 328
           P P SP + P++S+S+ +  LST     +LR + + I V+
Sbjct: 596 PTPTSPIYRPLSSLSSFSRKLSTVVRRSILRPISDIIPVR 635


>AL132948-2|CAC51076.2|  496|Caenorhabditis elegans Hypothetical
           protein Y39B6A.2 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 17  AENQTKAIEILLSVHL--NLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXX 190
           A+  + AIEI  +  L  N A  YLK     +  A + A  A+  D + VKG +RR    
Sbjct: 49  ADLYSVAIEIHPTAVLYGNRAQAYLKKEL--YGSALEDADNAIAIDPSYVKGFYRRATAN 106

Query: 191 XXXXXXXXXXKDFQKIIEIEPRTK 262
                      D+Q ++++ P  K
Sbjct: 107 MALGRFKKALTDYQAVVKVCPNDK 130


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/23 (69%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -2

Query: 411 SISALALCLSTCYL-VVVLRKLV 346
           S+SALALCLST  + V+VLR LV
Sbjct: 240 SLSALALCLSTMEIKVLVLRPLV 262


>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 SPITSISALALCLSTCYLVVVLRKLVEHIRVQLFLF 316
           S I  I ++AL ++TC +++   KL +    Q+F+F
Sbjct: 11  SVIYGIPSVALYITTCIVIIKNNKLFDSSFYQIFMF 46


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 SPITSISALALCLSTCYLVVVLRKLVEHIRVQLFLF 316
           S I  I ++AL ++TC +++   KL +    Q+F+F
Sbjct: 11  SVIYGIPSVALYITTCIVIIKNNKLFDSSFYQIFMF 46


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 300 YCSSTDYYLIGCCFVRGSISIIFW 229
           Y   T YYLIG CFV        W
Sbjct: 467 YSEKTTYYLIGGCFVIAIFMEFIW 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,444
Number of Sequences: 27780
Number of extensions: 152366
Number of successful extensions: 475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)