Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060408.seq
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu... 40 6e-04
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 38 0.004
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F... 37 0.007
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 34 0.050
At3g21640.1 68416.m02729 FKBP-type peptidyl-prolyl cis-trans iso... 33 0.12
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 31 0.35
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 29 1.4
At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase, pu... 27 4.4
At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase, pu... 27 4.4
At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase FKB... 27 4.4
At5g37360.1 68418.m04488 expressed protein 27 5.8
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 27 7.6
At1g29890.1 68414.m03653 acetyltransferase-related low similarit... 27 7.6
>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative similar to
rof1 [Arabidopsis thaliana] GI:1373396
Length = 578
Score = 40.3 bits (90), Expect = 6e-04
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = +2
Query: 20 ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
E + K+ ++ ++ +LN A LK+ + EA +TK L+ D NVK ++RR
Sbjct: 449 EEKKKSKDLKIACNLNDAACKLKLKD--YKEAAKLSTKVLEMDSRNVKAMYRRAHAYLET 506
Query: 200 XXXXXXXKDFQKIIEIEPRTKQQPI 274
D +K +EI+P K+ I
Sbjct: 507 ADLDLAELDIKKALEIDPDNKEVKI 531
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/75 (32%), Positives = 31/75 (41%)
Frame = +2
Query: 29 TKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXX 208
+K ILL+ LNL YLK H E ++ L +D NVK L+RR
Sbjct: 139 SKGGAILLACSLNLMSCYLKTN--QHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLF 196
Query: 209 XXXXKDFQKIIEIEP 253
D K E+ P
Sbjct: 197 EDAVSDLSKAHEVSP 211
>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
FK506-binding protein (ROF1) identical to rotamase FKBP
(ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
Genet. 252 (5), 510-517 (1996))
Length = 551
Score = 36.7 bits (81), Expect = 0.007
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +2
Query: 11 ETAENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXX 190
E + Q KA+++ + +LN A LK+ + +A+ TK L+ + NVK L+RR
Sbjct: 438 EEEKKQAKALKV--ACNLNDAACKLKLKD--YKQAEKLCTKVLELESTNVKALYRRAQAY 493
Query: 191 XXXXXXXXXXKDFQKIIEIEPRTKQ 265
D +K +EI+P ++
Sbjct: 494 MELSDLDLAEFDVKKALEIDPNNRE 518
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 33.9 bits (74), Expect = 0.050
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 65 NLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIE 244
N A YL++ +A++ TKA+ D+ NVK RR +DF+ +
Sbjct: 513 NRAAAYLELGGF--LQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALV 570
Query: 245 IEPRTKQ 265
+EP K+
Sbjct: 571 LEPNNKR 577
>At3g21640.1 68416.m02729 FKBP-type peptidyl-prolyl cis-trans
isomerase family protein similar to rof1 [Arabidopsis
thaliana] GI:1354207; contains Pfam profile: PF00254
FKBP-type peptidyl-prolyl cis-trans isomerases
Length = 365
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +2
Query: 26 QTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXX 205
Q A+ + HLN+A +K+ + EA H L +E N K LFRR
Sbjct: 222 QDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ 279
Query: 206 XXXXXKDFQKIIEIEPRTK 262
DF+K + P K
Sbjct: 280 MDSARDDFRKAQKYAPDDK 298
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 110 EAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQKIIEIEPRTK 262
+A+ TKA+ D+ NVK RR DF+ + +EP+ K
Sbjct: 540 QAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNK 590
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 29 TKAIEILLSVHLNLALVYLKVTPIHHF-EAKDHATKALKFDENNVKGLFRRXXXXXXXXX 205
TKAIE+ + + A T + + A A+KA++ D KG +RR
Sbjct: 37 TKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGK 96
Query: 206 XXXXXKDFQKIIEIEP 253
KDFQ++ + P
Sbjct: 97 FKDALKDFQQVKRLSP 112
>At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 545
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 56 VHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQK 235
+HLN+A LK+ ++ + K L+ +VKGL+RR DF
Sbjct: 361 LHLNVAACLLKMGEWR--KSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNM 418
Query: 236 IIEIE 250
+I+++
Sbjct: 419 MIKVD 423
>At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 635
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 56 VHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXXXXXXXXXKDFQK 235
+HLN+A LK+ ++ + K L+ +VKGL+RR DF
Sbjct: 451 LHLNVAACLLKMGEWR--KSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNM 508
Query: 236 IIEIE 250
+I+++
Sbjct: 509 MIKVD 513
>At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase
FKBP-type family protein similar to rof1 from
(Arabidopsis thaliana) GI:1373396, GI:1354207; contains
Pfam profile PF00515 TPR Domain
Length = 164
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +2
Query: 20 ENQTKAIEILLSVHLNLALVYLKVTPIHHFEAKDHATKALKFDENNVKGLFRRXXXXXXX 199
E Q KA+ + S LN A LK+ + E ++ L + NVK L+RR
Sbjct: 50 EKQVKALRV--SCFLNGAACSLKLK--NFLETIVLCSEVLDIEFQNVKALYRRAQSYIEV 105
Query: 200 XXXXXXXKDFQKIIEIEPRTKQ 265
D + +E +P ++
Sbjct: 106 GDLISAEMDINRALEADPENRE 127
>At5g37360.1 68418.m04488 expressed protein
Length = 309
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 22 KPNKSY*NTPVSSSEPRSSLLEGDSNPPFRSERPCDQS 135
KPNKS + S R +L E DS P E P +S
Sbjct: 37 KPNKSKRHNLSKSLTLRFALTESDSTKPLEIEEPSSKS 74
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 217 CQICFSQSEQSLTSPKKAFD 158
C IC + S+ +L++PKK F+
Sbjct: 167 CTICVNTSDDTLSNPKKDFE 186
>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
to O-acetyltransferase [Cryptococcus neoformans var.
neoformans] GI:17063556
Length = 470
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 405 SALALCLSTCYLVVVLRKLVEHIRVQLFLFPLLFL 301
S +AL +++C+LVV+L + + ++F PL FL
Sbjct: 215 SVMALKIASCFLVVILMWEIPGV-FEIFWSPLAFL 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,544
Number of Sequences: 28952
Number of extensions: 144199
Number of successful extensions: 471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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