Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060407.seq
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 105 6e-24
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 105 6e-24
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 66 3e-12
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 50 2e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 5e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 38 8e-04
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 38 0.001
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.017
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 34 0.017
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.017
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.017
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.48
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.1
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 1.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.5
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 5.9
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 5.9
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.9
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 5.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 105 bits (251), Expect = 6e-24
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 229 KDEQDRCITL 258
DEQ+R +T+
Sbjct: 61 ADEQERGVTI 70
Score = 74.5 bits (175), Expect = 1e-14
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 431
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 432 AL 437
AL
Sbjct: 125 AL 126
Score = 29.1 bits (62), Expect = 0.48
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 464 VCTKPKTVLRQAIAEASSLFCS*TKWNGALLELQL 568
VC + +TVLRQA+ E K + ALLELQ+
Sbjct: 135 VCVQTETVLRQALGERIRPVVVVNKVDRALLELQI 169
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 105 bits (251), Expect = 6e-24
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 229 KDEQDRCITL 258
DEQ+R +T+
Sbjct: 61 ADEQERGVTI 70
Score = 74.5 bits (175), Expect = 1e-14
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 431
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 432 AL 437
AL
Sbjct: 125 AL 126
Score = 29.1 bits (62), Expect = 0.48
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 464 VCTKPKTVLRQAIAEASSLFCS*TKWNGALLELQL 568
VC + +TVLRQA+ E K + ALLELQ+
Sbjct: 135 VCVQTETVLRQALGERIRPVVVVNKVDRALLELQI 169
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +1
Query: 67 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 246
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 247 CITL 258
IT+
Sbjct: 67 GITM 70
Score = 60.9 bits (141), Expect = 1e-10
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 434
+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 70 MKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGA 121
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 318 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAV 173
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 55 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 186
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.6 bits (103), Expect = 5e-06
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 73 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 252
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 253 TL 258
T+
Sbjct: 107 TV 108
Score = 39.1 bits (87), Expect = 4e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 345 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ +L+NLID+PGHVDF +EV +L +G +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCI 152
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 38.3 bits (85), Expect = 8e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 357 INLIDSPGHVDFSSEVTAALRVTDGAL 437
INLID+PGH DF+ EV ++ V DGA+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAV 121
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 100 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITLN 261
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R IT+N
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITIN 82
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 345 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
K F ID+PGHVDF EV A + ++DG +
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVV 237
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 33.9 bits (74), Expect = 0.017
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 91 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 261
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R IT++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITIS 105
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.48
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 511 CLGNSLTQYCFRFCTHTPDTQSTT 440
CL ++ + CF FCTH PDT T+
Sbjct: 54 CLFSNFSHSCFLFCTH-PDTLPTS 76
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 112 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 213
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/82 (19%), Positives = 40/82 (48%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCS 282
+++ I+H++ KS+ + V+ I + + G F+D ++ ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 283 SSLKRKI*YSSQTLTSVKRVRK 348
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGII 186
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 505 GNSLTQYCFRFCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 326
GN + Q + + T S+++ +PS + + TS S+ S S S
Sbjct: 119 GNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178
Query: 325 SGFVMNTKSFSSSSKN 278
S ++ S SSSS +
Sbjct: 179 SSSSSSSSSSSSSSSS 194
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 454 TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNI 275
+ +TTT +PS + S++ +S S+ S S S S ++ S SSSS +
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 274 EMAV 263
+ +
Sbjct: 207 SVPI 210
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 5.9
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Frame = +1
Query: 28 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII------- 186
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211
Query: 187 ---AGARAGETRFT-----DTRKDEQDRCITLNLRPSLCSSSLK 294
A +G+ F+ DT ++E+ R +T+++ + S K
Sbjct: 212 LHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 349 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 254
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 105 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 10
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 100 SASCPSSHGSRLP*NSPF*MVYDFCSIK 17
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 134 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 241
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSL 165
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,970
Number of Sequences: 5004
Number of extensions: 44944
Number of successful extensions: 160
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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