Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060407.seq
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 136 1e-32
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.22
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.50
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.66
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 3.5
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 136 bits (329), Expect = 1e-32
Identities = 80/167 (47%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +1
Query: 52 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 231
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 232 DEQDRCITLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRKVXXXXXXXXXXXXXXXXK*QL 411
DEQDRCIT+ L + +T K ++
Sbjct: 61 DEQDRCITIKSTAISLYYELPES---DFEYITQPKDPKERGFLINLIDSPGHVDFSSEVT 117
Query: 412 HSVSLMEPLWLLTVCL--VCVYKTENSTASGYCRGIKPILFMNXMER 546
++ + + ++ C+ VCV +TE IKP+LFMN M+R
Sbjct: 118 AALRVTDGALVVVDCVSGVCV-QTETVLRQAIAERIKPVLFMNKMDR 163
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/61 (73%), Positives = 52/61 (85%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 434
IKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 69 IKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGA 126
Query: 435 L 437
L
Sbjct: 127 L 127
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = +2
Query: 452 CVWCVCTKPKTVLRQAIAEASSLFCS*TKWNGALLELQL 568
CV VC + +TVLRQAIAE K + ALLELQL
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 170
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 258
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITV 1991
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 229 KDEQDRCITLNLRPSLCSSSLKRKI 303
+ + NL ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 112 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 213
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 112 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 213
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 434
IK A S F E+E + + + + + IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
Query: 435 L 437
+
Sbjct: 107 I 107
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 88 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 201
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 299
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 298 FSSSSK 281
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 430 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 308
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKST 383
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKST 383
T TP+TQSTTT P T+S T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 431 SPCGC*LCVWCVCTK 475
SPC C+WC C+K
Sbjct: 18 SPCALYFCIWCECSK 32
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 142 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNL-RPSLCSSSLKR 297
K+ + D+LV GI+ R G +TD + +R R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,118
Number of Sequences: 59808
Number of extensions: 369988
Number of successful extensions: 1230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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