Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060407.seq
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 136 8e-33
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 136 8e-33
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 63 2e-10
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 47 1e-05
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 47 1e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 44 6e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 43 2e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 0.001
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 0.001
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 0.001
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.007
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.007
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.19
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.19
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.19
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 33 0.19
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.44
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.3
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.3
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 1.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.4
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 29 2.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.4
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.1
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical... 28 5.4
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 28 5.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 7.2
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 7.2
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 7.2
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein. 27 9.5
AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 136 bits (330), Expect = 8e-33
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 229 KDEQDRCITL 258
KDEQ+RCIT+
Sbjct: 61 KDEQERCITI 70
Score = 91.5 bits (217), Expect = 4e-19
Identities = 51/69 (73%), Positives = 55/69 (79%), Gaps = 8/69 (11%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 410
IKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 411 ALRVTDGAL 437
ALRVTDGAL
Sbjct: 130 ALRVTDGAL 138
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = +2
Query: 452 CVWCVCTKPKTVLRQAIAEASSLFCS*TKWNGALLELQL 568
CV VC + +TVLRQAIAE K + ALLELQL
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 181
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 136 bits (330), Expect = 8e-33
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +1
Query: 49 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 228
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 229 KDEQDRCITL 258
KDEQ+RCIT+
Sbjct: 61 KDEQERCITI 70
Score = 88.6 bits (210), Expect = 3e-18
Identities = 50/69 (72%), Positives = 54/69 (78%), Gaps = 8/69 (11%)
Frame = +3
Query: 255 IKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 410
IKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 411 ALRVTDGAL 437
AL VTDGAL
Sbjct: 130 ALGVTDGAL 138
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = +2
Query: 452 CVWCVCTKPKTVLRQAIAEASSLFCS*TKWNGALLELQL 568
CV VC + +TVLRQAIAE K + ALLELQL
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQL 181
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +1
Query: 100 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 258
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +3
Query: 354 LINLIDSPGHVDFSSEVTAALRVTDGAL 437
LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIAL 111
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +1
Query: 100 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 258
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +3
Query: 354 LINLIDSPGHVDFSSEVTAALRVTDGAL 437
LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIAL 111
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +3
Query: 345 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGIL 130
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 258
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITV 90
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 306 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 82 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITL 258
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R ++
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 259 NLRP 270
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 306 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 104
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITLN 261
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R ++
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 262 LRP 270
+P
Sbjct: 61 SQP 63
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 348 GFLINLIDSPGHVDFSSEVTAALRVTDGAL 437
G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAV 140
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGII 186
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 249 HHIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 428
H K ++ F ++E + + + + KG INLID+PGHVDF EV +RV D
Sbjct: 57 HVDKGNTVTDFLDIERERGITVQSAAVN-LDWKGHRINLIDTPGHVDFRVEVERCVRVLD 115
Query: 429 G 431
G
Sbjct: 116 G 116
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITL 258
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT+
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITV 78
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 261
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 261
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 261
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSS 288
N+ I H+DHGK+TLT ++ A+ + D K+E+ R IT+N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 289 LKR 297
L+R
Sbjct: 107 LRR 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSS 288
N+ I H+DHGK+TLT ++ A+ + D K+E+ R IT+N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 289 LKR 297
L+R
Sbjct: 107 LRR 109
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 32.7 bits (71), Expect = 0.19
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +1
Query: 34 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 210
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 211 RFTDTRKDEQDRCITLNLRPSLCSSSLKRKI*YSSQTLTSV 333
R +QD ++L L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 115 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSSLK 294
+++ D GK+TL ++L S AG G A +F TR+ C +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 295 RKI*Y 309
R + Y
Sbjct: 111 RSLLY 115
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 88 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 213
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 464 HTRHTVNNHKGSISDTECSCYFRREINV 381
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 457 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 362
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTK 302
T +T STT+ P +T + + +E T S+ P L RW V K
Sbjct: 703 TTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERWKAIVNKFK 758
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 347
T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 228 TTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 136 DRRGRSQTCCGYSASCPSSHG 74
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 350
T + +TTT APS T + VT K P E KL+KK
Sbjct: 770 TKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 136 DRRGRSQTCCGYSASCPSSHG 74
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 51 GEFHGRRDPWDDGQEAEYPQHVCDR 125
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 51 GEFHGRRDPWDDGQEAEYPQHVCDR 125
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 469 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 335
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +1
Query: 97 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 231
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
Query: 232 DEQDRCITLNLRPSLCSSSLKR 297
+E++R +T+++ + +S +R
Sbjct: 228 EERERGVTMDIGRTSFETSHRR 249
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +1
Query: 97 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 231
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
Query: 232 DEQDRCITLNLRPSLCSSSLKR 297
+E++R +T+++ + +S +R
Sbjct: 246 EERERGVTMDIGRTSFETSHRR 267
>AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical
protein Y47D3B.3 protein.
Length = 446
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 487 YCFRFCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 377
+CF C +T +T STTT P T A + CP
Sbjct: 322 FCFVSC-NTTETNSTTTPIPHSTSEAPLKCTRDYHCP 357
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 370 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLM 254
S+ L+ PF L +R +G+ + FSS S + MAV ++
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVL 106
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 243
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 243
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 460 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 287
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 460 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 287
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 463 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 287
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 286 SKN 278
S N
Sbjct: 216 SGN 218
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSLVSKAGII 186
NM + HVD GKST+ L+ G++
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV 136
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 463 TPDTQSTTTRAPSVTRSAAVTSEEKST 383
T + +TTT AP+ T S VT+ E +T
Sbjct: 243 TTEASTTTTEAPTTTTSEEVTTTEITT 269
>Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical
protein T26E3.3a protein.
Length = 309
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 246 LHHIKSTAISMFFELEEKDLVFITNPDQREKS 341
LHH++S ++ + DL+ ITN D KS
Sbjct: 50 LHHLESVQFTLCYNSTGGDLLPITNDDNLRKS 81
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 401 FRREINVSR*VNQVDQETFLTLFTLVRVCDE 309
+R + + V VD ETF+ TL +VCDE
Sbjct: 1340 YRAITGLQKKVPNVDLETFVETSTLDKVCDE 1370
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 151 GLTCRDRRGRSQTCCGYSASCPSSH 77
G RD G Q+C CPSSH
Sbjct: 607 GSPLRDSNGALQSCSERDGGCPSSH 631
>AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein.
Length = 309
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 246 LHHIKSTAISMFFELEEKDLVFITNPDQREKS 341
LHH++S ++ + DL+ ITN D KS
Sbjct: 50 LHHLESVQFTLCYNSTGGDLLPITNDDNLRKS 81
>AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical
protein E03H12.3 protein.
Length = 335
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 478 RFCT-HTPDTQSTTTRAPSVTRSAAVTSEEKSTCPG 374
+F T +TPD Q TT RSA TS S C G
Sbjct: 222 KFITGYTPDYQYTTVWLSGTMRSACQTSPIPSGCDG 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,582
Number of Sequences: 27780
Number of extensions: 262645
Number of successful extensions: 1078
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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