Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060407.seq
(570 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 33 0.003
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 33 0.003
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 29 0.025
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 0.40
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 24 0.92
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 24 0.92
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 24 1.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 3.7
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 4.9
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 4.9
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 4.9
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 351 FLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ + +ID+PGH DF + D A+
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 180
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 351 FLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ + +ID+PGH DF + D A+
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 29.5 bits (63), Expect = 0.025
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 112 MSVIAHVDHGKSTLTDSL 165
++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165
Score = 24.2 bits (50), Expect = 0.92
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 342 EKGFLINLIDSPGHVDFSSEVTAALRVTD 428
E G + +D+PGH F S +TD
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITD 218
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.4 bits (53), Expect = 0.40
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 109 NMSVIAHVDHGKSTLTDSL 165
N+ I HV HGKST+ ++
Sbjct: 44 NIGTIGHVAHGKSTIVKAI 62
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 351 FLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ + +ID+PGH DF + D A+
Sbjct: 12 YYVTIIDAPGHRDFIKNMITGTSQADCAV 40
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.2 bits (50), Expect = 0.92
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 351 FLINLIDSPGHVDFSSEVTAALRVTDGAL 437
+ + +ID+PGH DF + D A+
Sbjct: 28 YYVTIIDAPGHRDFIKNMITGTSQADCAV 56
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.8 bits (49), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 415 SVSLMEPLWL-LTVCLVCVYKTENSTASGYCRGIKPILFM 531
S L++ WL ++ V+KT++ T Y R PILFM
Sbjct: 336 SKHLLQNTWLDPEYPMIRVHKTQSQTIDIYSRIGFPILFM 375
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 3.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 90 VHHPTDLVYREIHH 49
+HHP + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 270 ISMFFELEEKDLVFITNPDQREKSEKGFLI 359
++MF+ D+ I+N +Q + S GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.8 bits (44), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 454 TQSTTTRAP-SVTRSAAVTSEEKSTC 380
+ STTT +P + T+S V + STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 270 ISMFFELEEKDLVFITNPDQREKSEKGFLI 359
++MF+ D+ I+N +Q + S GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,447
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -