Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ40 Cluster: Syntaxin 5A; n=1; Bombyx mori|Rep: Synt...   175   8e-43
UniRef50_Q16IW0 Cluster: Syntaxin; n=1; Aedes aegypti|Rep: Synta...    52   1e-05
UniRef50_Q24509 Cluster: Syntaxin-5; n=8; Eumetazoa|Rep: Syntaxi...    50   5e-05
UniRef50_UPI00003C0405 Cluster: PREDICTED: similar to Y73E7A.3 i...    33   4.5  
UniRef50_Q2UG62 Cluster: Structure-specific endonuclease ERCC1-X...    33   4.5  
UniRef50_A3XPW9 Cluster: Adenylate cyclase-related protein; n=1;...    32   7.9  

>UniRef50_Q1HQ40 Cluster: Syntaxin 5A; n=1; Bombyx mori|Rep:
           Syntaxin 5A - Bombyx mori (Silk moth)
          Length = 356

 Score =  175 bits (425), Expect = 8e-43
 Identities = 85/89 (95%), Positives = 86/89 (96%)
 Frame = +2

Query: 251 ESVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 430
           + VHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ
Sbjct: 28  KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 87

Query: 431 GRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
           GRFLNKPTVRDDRKAAVLETYSQFMS  K
Sbjct: 88  GRFLNKPTVRDDRKAAVLETYSQFMSMAK 116



 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 171 MLPRRRNIGVTERLLETETDSYNKLDKK 254
           MLPRRRNIGVTERLLETETDSYNKLDKK
Sbjct: 1   MLPRRRNIGVTERLLETETDSYNKLDKK 28


>UniRef50_Q16IW0 Cluster: Syntaxin; n=1; Aedes aegypti|Rep: Syntaxin
           - Aedes aegypti (Yellowfever mosquito)
          Length = 291

 Score = 51.6 bits (118), Expect = 1e-05
 Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = +2

Query: 368 EPVMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQF 502
           E +MASRDR++EF + +RSLQGR + +   VRD RKA  L++YS+F
Sbjct: 100 EFIMASRDRSTEFANAIRSLQGRNIQRAVNVRDPRKAKQLQSYSEF 145


>UniRef50_Q24509 Cluster: Syntaxin-5; n=8; Eumetazoa|Rep: Syntaxin-5
           - Drosophila melanogaster (Fruit fly)
          Length = 467

 Score = 49.6 bits (113), Expect = 5e-05
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQFM 505
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++YS+FM
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFM 201


>UniRef50_UPI00003C0405 Cluster: PREDICTED: similar to Y73E7A.3
           isoform 1; n=3; Endopterygota|Rep: PREDICTED: similar to
           Y73E7A.3 isoform 1 - Apis mellifera
          Length = 420

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 246 LIYCMNPFLFPRVFL*RLYFAFEEASHCSLQSSLRKPIAFK*LRTFIVHSCVYNIYHFIS 67
           ++YC+  F+F  +    LY    E+   +LQ SL    +F  L   +VH   ++  +F+S
Sbjct: 268 VVYCITQFIFFSLVPVVLY----ESGATALQLSLLTADSFNVLAGMLVHQYKFHALYFVS 323

Query: 66  SILFKTR*YIYLL 28
             L  T  YIY +
Sbjct: 324 YTLTMTGIYIYAI 336


>UniRef50_Q2UG62 Cluster: Structure-specific endonuclease ERCC1-XPF;
           n=7; Eurotiomycetidae|Rep: Structure-specific
           endonuclease ERCC1-XPF - Aspergillus oryzae
          Length = 342

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +2

Query: 251 ESVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 430
           E+ HY E   +++S NS+ T I     Q   + L EFV  P   ++   +  IST  SLQ
Sbjct: 162 EAAHYLEL--FKSSENSQPTAIRTQQAQSYKESLVEFVTAPRSINKSDAASLISTFGSLQ 219

Query: 431 GRFLNKP 451
                +P
Sbjct: 220 NAINAQP 226


>UniRef50_A3XPW9 Cluster: Adenylate cyclase-related protein; n=1;
           Leeuwenhoekiella blandensis MED217|Rep: Adenylate
           cyclase-related protein - Leeuwenhoekiella blandensis
           MED217
          Length = 347

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -3

Query: 219 FPRVFL*RLYFAFEEASHCSLQSSLRKPIAFK*LRTFIVHSCVYNIYHFIS 67
           FP++FL  + F F  A+  SL   L K + FK   + IV+S V  I++F++
Sbjct: 39  FPKLFLFFMAFGFLTATVLSLVEGLLKILPFK-SSSLIVNSLVRTIFYFVA 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,760,048
Number of Sequences: 1657284
Number of extensions: 8464630
Number of successful extensions: 18127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18120
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)