Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   5.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  

>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 157 SVFT*KTN-SVQIITYFHSTFMCVQYLSFHLIDSF 56
           +++T   N S  ++ Y HS      Y SF+  D F
Sbjct: 102 TIYTTHVNASFDVVVYIHSGAFMTGYGSFYQPDYF 136


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L+ +E
Sbjct: 254 YNRYLTRRRRIEIAHTLVLSE 274


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L+ +E
Sbjct: 254 YNRYLTRRRRIEIAHTLVLSE 274


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 446 KPTVRDDRKAAVLETYSQFMSWPK 517
           KPT    R   V  T S    WP+
Sbjct: 498 KPTEFACRPGTVFHTQSNICDWPE 521


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L+ +E
Sbjct: 254 YNRYLTRRRRIEIAHTLVLSE 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,012
Number of Sequences: 336
Number of extensions: 2252
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)