Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   7.5  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   7.5  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 265 VMNTFLSNLLYESVSVSKSLSVTPIFRL 182
           +MN+ +SN+L    S+ K  SV P   L
Sbjct: 385 IMNSNISNILKSGFSIGKKFSVVPFATL 412


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 272 SRPYENSSNSKSTLIL--KSSDQDVFK 346
           S PY+N  NSKS  +L  K+ D  + K
Sbjct: 189 SSPYKNKDNSKSNSLLSFKTDDDSITK 215


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 392 RTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSW 511
           R  +  S + S+QG FL +P V DD    ++E Y    S+
Sbjct: 333 RRPDDFSFIPSMQGPFLLQPAVADDE---LIEDYCDIYSF 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,993
Number of Sequences: 5004
Number of extensions: 40969
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)