Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 32   0.28 
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               28   5.9  
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   27   7.9  
SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)                     27   7.9  

>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 386 RDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
           RDRT+EF S V+S+Q R     T+  D K +VLE  +Q +   K
Sbjct: 41  RDRTTEFYSAVKSIQSRQSKLATMSKDFK-SVLEVRTQNLKQQK 83


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 260 HYGESRPY--ENSSNSKSTLILKSSDQDVFKF 349
           HY ++ PY  E+ S+  STL ++   QD++K+
Sbjct: 16  HYHDTMPYYEESKSSILSTLYIEEGRQDIYKW 47


>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 186  RNIGVTERLLETETDSYNKLDKKVFITGNRGLTRTH 293
            R +  T+ +++ + D +   DK +  TGN  +TR H
Sbjct: 936  RTLNGTDIMVDWQIDGWTYHDKTIQTTGNTTITRNH 971


>SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 389 DRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
           D + E  S++   Q RFL+KP VR  + +       + ++WP+
Sbjct: 71  DTSEEDYSSINMAQ-RFLSKPAVRQYKSSPFAVRRKRSLTWPR 112


>SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)
          Length = 496

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 139 TNSVQIITYFHSTFMCVQYLSFHLIDSFQNSMI 41
           T S  II   H T +C   LS+H+ID+  +S +
Sbjct: 429 TLSYHIIDTDHHTEVCTTTLSYHIIDTDHHSEV 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,573
Number of Sequences: 59808
Number of extensions: 267052
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)