Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060406.seq
(557 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY005130-1|AAF89088.1| 666|Homo sapiens frizzled-3 protein. 31 3.6
AJ272427-1|CAB89114.1| 666|Homo sapiens frizzled homolog 3 prot... 31 3.6
AB039723-1|BAA94968.1| 666|Homo sapiens WNT receptor frizzled-3... 31 3.6
U26648-1|AAC71078.1| 301|Homo sapiens syntaxin 5 protein. 30 6.3
BX537426-1|CAD97668.1| 355|Homo sapiens hypothetical protein pr... 30 6.3
BT019647-1|AAV38453.1| 301|Homo sapiens syntaxin 5A protein. 30 6.3
BT019646-1|AAV38452.1| 301|Homo sapiens syntaxin 5A protein. 30 6.3
BC012137-1|AAH12137.2| 355|Homo sapiens syntaxin 5 protein. 30 6.3
BC002645-1|AAH02645.1| 267|Homo sapiens STX5 protein protein. 30 6.3
AL391560-5|CAI15249.2| 855|Homo sapiens ring finger protein 17 ... 30 6.3
AL391560-3|CAI15248.2| 1623|Homo sapiens ring finger protein 17 ... 30 6.3
AL354798-5|CAI16636.2| 855|Homo sapiens ring finger protein 17 ... 30 6.3
AL354798-2|CAM23326.1| 1623|Homo sapiens ring finger protein 17 ... 30 6.3
>AY005130-1|AAF89088.1| 666|Homo sapiens frizzled-3 protein.
Length = 666
Score = 30.7 bits (66), Expect = 3.6
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 83 ILYTHECTMKVRNYLNAIGFLSED*RLQCDASSKAKYRRYRKTLGNRN 226
I++ C M V + + IGFL ED R+ C+AS A+Y+ T G+ N
Sbjct: 238 IIFYAVCYMMV-SLIFFIGFLLED-RVACNASIPAQYKASTVTQGSHN 283
>AJ272427-1|CAB89114.1| 666|Homo sapiens frizzled homolog 3
protein.
Length = 666
Score = 30.7 bits (66), Expect = 3.6
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 83 ILYTHECTMKVRNYLNAIGFLSED*RLQCDASSKAKYRRYRKTLGNRN 226
I++ C M V + + IGFL ED R+ C+AS A+Y+ T G+ N
Sbjct: 238 IIFYAVCYMMV-SLIFFIGFLLED-RVACNASIPAQYKASTVTQGSHN 283
>AB039723-1|BAA94968.1| 666|Homo sapiens WNT receptor frizzled-3
protein.
Length = 666
Score = 30.7 bits (66), Expect = 3.6
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 83 ILYTHECTMKVRNYLNAIGFLSED*RLQCDASSKAKYRRYRKTLGNRN 226
I++ C M V + + IGFL ED R+ C+AS A+Y+ T G+ N
Sbjct: 238 IIFYAVCYMMV-SLIFFIGFLLED-RVACNASIPAQYKASTVTQGSHN 283
>U26648-1|AAC71078.1| 301|Homo sapiens syntaxin 5 protein.
Length = 301
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 36
>BX537426-1|CAD97668.1| 355|Homo sapiens hypothetical protein
protein.
Length = 355
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 90
>BT019647-1|AAV38453.1| 301|Homo sapiens syntaxin 5A protein.
Length = 301
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 36
>BT019646-1|AAV38452.1| 301|Homo sapiens syntaxin 5A protein.
Length = 301
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 36
>BC012137-1|AAH12137.2| 355|Homo sapiens syntaxin 5 protein.
Length = 355
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 90
>BC002645-1|AAH02645.1| 267|Homo sapiens STX5 protein protein.
Length = 267
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 377 MASRDRTSEFISTVRSLQ----GRFLNKPTVRDDRK 472
M+ RDRT EF+S +SLQ G NKP +R R+
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQ 36
>AL391560-5|CAI15249.2| 855|Homo sapiens ring finger protein 17
protein.
Length = 855
Score = 29.9 bits (64), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 407 ISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
I VR ++ FLN P K A +E Y + M W K
Sbjct: 95 IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSK 131
>AL391560-3|CAI15248.2| 1623|Homo sapiens ring finger protein 17
protein.
Length = 1623
Score = 29.9 bits (64), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 407 ISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
I VR ++ FLN P K A +E Y + M W K
Sbjct: 771 IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSK 807
>AL354798-5|CAI16636.2| 855|Homo sapiens ring finger protein 17
protein.
Length = 855
Score = 29.9 bits (64), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 407 ISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
I VR ++ FLN P K A +E Y + M W K
Sbjct: 95 IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSK 131
>AL354798-2|CAM23326.1| 1623|Homo sapiens ring finger protein 17
protein.
Length = 1623
Score = 29.9 bits (64), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 407 ISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSWPK 517
I VR ++ FLN P K A +E Y + M W K
Sbjct: 771 IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSK 807
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,128,717
Number of Sequences: 237096
Number of extensions: 1212842
Number of successful extensions: 1847
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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