Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069832-1|AAL39977.1|  467|Drosophila melanogaster SD07852p pro...    50   3e-06
AE014134-2696|AAN10935.1|  467|Drosophila melanogaster CG4214-PB...    50   3e-06
AE014134-2695|AAF53520.2|  467|Drosophila melanogaster CG4214-PA...    50   3e-06
X78219-1|CAA55064.1|  310|Drosophila melanogaster SED5 protein.        48   9e-06

>AY069832-1|AAL39977.1|  467|Drosophila melanogaster SD07852p
           protein.
          Length = 467

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQFM 505
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++YS+FM
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFM 201


>AE014134-2696|AAN10935.1|  467|Drosophila melanogaster CG4214-PB,
           isoform B protein.
          Length = 467

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQFM 505
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++YS+FM
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFM 201


>AE014134-2695|AAF53520.2|  467|Drosophila melanogaster CG4214-PA,
           isoform A protein.
          Length = 467

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQFM 505
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++YS+FM
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFM 201


>X78219-1|CAA55064.1|  310|Drosophila melanogaster SED5 protein.
          Length = 310

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query: 377 MASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYSQFM 505
           MA+RDRT EF + +RSLQ R + +   +RD RKA  +++YS+FM
Sbjct: 1   MAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFM 44


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,346,100
Number of Sequences: 53049
Number of extensions: 376543
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)