Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical ...    28   5.2  
U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 266 GESRPYENSSNSKST--LILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQGRF 439
           G++ P E SS+S ++  L   +       F   FVF   +  R  +S  +ST  S     
Sbjct: 508 GKTTPLETSSSSSTSQRLTTTTKSSTTSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSST 567

Query: 440 LNKPT 454
             KPT
Sbjct: 568 TTKPT 572


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 516 FGQLMNWE*VSNTAAFLSSLTVGLFKKRPWRLRTVEMNSLV 394
           F  +M W   +N A F+ S T+G F  +     T  +NSLV
Sbjct: 142 FPMIMTWPIATNNAYFIYSPTLGGFATKTVANSTEVLNSLV 182


>AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical
           protein Y75B12B.7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 250 LSNLLYESVSVSKSLSVTPIFRLRGSIAL*S--SVFT*KTNSVQIITYFHSTFMCVQYLS 77
           LSN+ + S+ + KSL  +P+F +   I +     + T   N ++ I  F+    C+ + +
Sbjct: 31  LSNIFHFSILIRKSLRSSPVFSMMFVICICDLLQLLTQTQNDIKYILEFNQPDFCLGFDT 90

Query: 76  FH 71
           ++
Sbjct: 91  YY 92


>U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical
           protein K09C4.5 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 557 PNWVYVLVIFLLITLANS*IGSKFPT 480
           PN +Y+L+ FLL+ ++N+ +   FPT
Sbjct: 7   PNIIYMLLCFLLMDISNTVLMLLFPT 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,207
Number of Sequences: 27780
Number of extensions: 215902
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)