Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.4  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 127 QIITYFHSTFMCVQYLSFHLIDSFQNSMIYLSFK 26
           +I TYF  T  C   L+FH I    N++  L+ +
Sbjct: 328 EISTYFTFTRPCGITLTFHEILKRANTLFVLTLQ 361


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L  TE
Sbjct: 29  YNRYLTRRRRIEIAHALCLTE 49


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L  TE
Sbjct: 291 YNRYLTRRRRIEIAHALCLTE 311


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 368 EPVMASRDRTSEFISTVRSLQGRFL 442
           EP +  +  T EF+ST+  L  +F+
Sbjct: 21  EPSVMLKIWTEEFLSTILRLDPKFI 45


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 162 YNAMLPRRRNIGVTERLLETE 224
           YN  L RRR I +   L  TE
Sbjct: 29  YNHYLTRRRRIEIAHALCLTE 49


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 317 LKSSDQDVFKFLEEFVFEPVMASRDRTSEFIS 412
           LKSSDQ    F  + V +    + D T  +IS
Sbjct: 161 LKSSDQTSDSFFVDLVIDVDPNNCDNTYAYIS 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,934
Number of Sequences: 438
Number of extensions: 2700
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)