Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060406.seq
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53180.1 68414.m06027 expressed protein                             32   0.30 
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    29   1.6  
At2g11520.1 68415.m01242 protein kinase family protein contains ...    28   4.9  

>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = +2

Query: 245 R*ESVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRS 424
           R   + Y  S PY +SS S ST   K  D D+ K LE      ++ +    S    +   
Sbjct: 28  RSRGLRYCHSDPYPSSS-STSTSPEKMGDSDIGKVLEASTGRSLIRASSIDSREGGSQTK 86

Query: 425 LQGRFLNKPTVRDDRK 472
           L GRF  K  V++ R+
Sbjct: 87  LTGRFSEKIRVQEQRQ 102


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 254 SVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQG 433
           ++  G  R    S +  + LILK+ D D   F  +FVF P   +  + SEF +       
Sbjct: 67  TIRIGSLRVLVVSDSDTAKLILKTHDPD---FASKFVFGPRQFNVYKGSEFFNAPYGSYW 123

Query: 434 RFLNK 448
           RF+ K
Sbjct: 124 RFMKK 128


>At2g11520.1 68415.m01242 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 510

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +2

Query: 251 ESVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMAS--RDRTSEFISTVRS 424
           +S H   ++PY+  S       +  +  +  +F E   F         D  S+   T+ S
Sbjct: 41  KSDHLTYTKPYQQGS----LFTINGNPVEKLRFCEALRFHKANGCIFEDSFSDDFCTIHS 96

Query: 425 LQGR-FLNKPTVRDDRKAAVLETYS 496
           L GR FL + TV+D + +     YS
Sbjct: 97  LLGRRFLEEKTVKDSKNSKPKTEYS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,302
Number of Sequences: 28952
Number of extensions: 191348
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)