Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060405.seq
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   6.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   6.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 211 KPFSPRKSVPWCLRNEGNCRSL 276
           K  SP + +  C+ N+G C SL
Sbjct: 910 KVLSPGELLSSCVSNDGGCSSL 931


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 268 GSFLHFVSTMELTSSGKKVLSSPLYATLILGLP--PSLTTSKGQ 143
           G  +     ++ +S+G+ V  SP+    ++G P  P++   +G+
Sbjct: 16  GKMVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGE 59


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 335 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 427
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 309 VITAFCTVLPR*ASAVSFIS*APWN*LPRGKRFCLH 202
           V+TAF    P      +     P N LP  KRF  H
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAH 85


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 309 VITAFCTVLPR*ASAVSFIS*APWN*LPRGKRFCLH 202
           V+TAF    P      +     P N LP  KRF  H
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAH 85


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 301 SYHGSRVLQ*LSKTSHKRCRYHLRLERS 384
           SY   R  +   KTS +R R  +  ERS
Sbjct: 271 SYKNEREYRKYGKTSKERSRDRMERERS 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,023
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)