Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060404.seq
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|R... 139 3e-32
UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67; Eukaryo... 132 4e-30
UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107; Fungi/... 131 9e-30
UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57; Eukaryo... 122 7e-27
UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4... 98 1e-19
UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, wh... 97 2e-19
UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative; ... 97 2e-19
UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951, ... 91 1e-17
UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-gr... 85 1e-15
UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas ... 68 1e-10
UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;... 65 1e-09
UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1; Encephal... 56 5e-07
UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;... 53 4e-06
UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillard... 52 9e-06
UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1; ... 52 9e-06
UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus... 50 3e-05
UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31; Archa... 42 0.007
UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1; Methan... 41 0.016
UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12; Archa... 40 0.050
UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8; Euryar... 38 0.12
UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2; environm... 37 0.27
UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2; Methan... 35 1.1
UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella... 35 1.4
>UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|Rep:
Ribosomal protein L5e - Hister sp. APV-2005
Length = 268
Score = 139 bits (337), Expect = 3e-32
Identities = 65/81 (80%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNKQYFKR+QVKFKRRREG TDYYARKRL+V KNK NTPKYRLIVR SN+D+
Sbjct: 1 MGFVKVVKNKQYFKRFQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
TCQ+AYSR EG ILCA H
Sbjct: 61 TCQIAYSRIEGDKILCAAYSH 81
Score = 56.0 bits (129), Expect(2) = 3e-12
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +2
Query: 419 GDEYNVEPVXNGPGAFRXYLDVGLARTTXG 508
GDEYNVE V NGPGAFR YLDVGL RTT G
Sbjct: 96 GDEYNVESVENGPGAFRCYLDVGLNRTTTG 125
Score = 37.9 bits (84), Expect(2) = 3e-12
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVK 307
I+CAAYSHELPRYGVK
Sbjct: 74 ILCAAYSHELPRYGVK 89
>UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67;
Eukaryota|Rep: 60S ribosomal protein L5 - Drosophila
melanogaster (Fruit fly)
Length = 299
Score = 132 bits (320), Expect = 4e-30
Identities = 62/81 (76%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNKQYFKRYQVKF+RRREG TDYYARKRL KNK NTPKYRLIVRLSNKD+
Sbjct: 1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
T Q+AY+R EG ++CA H
Sbjct: 61 TVQIAYARIEGDRVVCAAYSH 81
Score = 99.1 bits (236), Expect = 6e-20
Identities = 46/83 (55%), Positives = 54/83 (65%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
+VCAAYSHELP+YG++ GLTNYAAAY TG G+E+NVE
Sbjct: 74 VVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
PV +GPGAFR +LDVGLARTT G
Sbjct: 134 PVDDGPGAFRCFLDVGLARTTTG 156
>UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107;
Fungi/Metazoa group|Rep: 60S ribosomal protein L5 - Homo
sapiens (Human)
Length = 297
Score = 131 bits (317), Expect = 9e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 2e-18
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57;
Eukaryota|Rep: 60S ribosomal protein L5 - Caenorhabditis
elegans
Length = 293
Score = 122 bits (293), Expect = 7e-27
Identities = 55/76 (72%), Positives = 63/76 (82%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MG VKV+KNK YFKRYQVK +RRREG TDYYARKRL V KNK NTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 222 TCQVAYSRXEGTILCA 269
Q+AYS+ EG ++ A
Sbjct: 61 VAQLAYSKIEGDVVVA 76
Score = 73.7 bits (173), Expect = 3e-12
Identities = 38/83 (45%), Positives = 46/83 (55%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
+V +AYSHELPRYG+K GLTNYAAAY+TG G++YNVE
Sbjct: 74 VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
F+ LD+GLARTT G
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155
>UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4;
Leishmania|Rep: 60S ribosomal protein L5, putative -
Leishmania major strain Friedlin
Length = 328
Score = 97.9 bits (233), Expect = 1e-19
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
M FVKVVKNK YFKR+QVK++RRREG TDY+AR+++V+ K K +PKYRL+VR++NKD+
Sbjct: 24 MPFVKVVKNKAYFKRFQVKYRRRREGKTDYHARRQMVLQDKTKFGSPKYRLVVRITNKDI 83
Query: 222 TCQVAYSRXEG 254
Q+ ++ G
Sbjct: 84 IAQIVQAKIVG 94
Score = 56.0 bits (129), Expect = 5e-07
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
+V AAY+HELP +G++ GLTNYAAAY+TG G V
Sbjct: 97 VVMAAYAHELPAFGIEHGLTNYAAAYATGLLLARRTLAKLGIADKFQGAKEADGSYSAVR 156
Query: 440 PVXNGPG------AFRXYLDVGLARTTXG 508
+ G F+ LDVGLARTT G
Sbjct: 157 TKKDDEGDDEERFPFKAILDVGLARTTTG 185
>UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 338
Score = 97.5 bits (232), Expect = 2e-19
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
M FVK+VK YFKR+Q KF+RRREG TDYYAR RL+V K+K N+PKYR +VR +N +
Sbjct: 1 MAFVKLVKGTPYFKRFQTKFRRRREGKTDYYARSRLIVQDKDKYNSPKYRFVVRHTNTKI 60
Query: 222 TCQVAYSRXEG 254
CQV Y+ +G
Sbjct: 61 ICQVIYATLKG 71
Score = 43.6 bits (98), Expect = 0.003
Identities = 30/83 (36%), Positives = 38/83 (45%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
+V AA S EL R+G+ GLTNYAAAY+TG G N++
Sbjct: 74 VVAAAESTELKRFGLTSGLTNYAAAYATGLLLARRTLKTLKMDKFYEGNKTIDG---NLK 130
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
P F LD+GL R+T G
Sbjct: 131 TQRERP--FFAVLDIGLVRSTLG 151
>UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative;
n=4; Plasmodium (Vinckeia)|Rep: Ribosomal protein family
L5, putative - Plasmodium berghei
Length = 314
Score = 97.1 bits (231), Expect = 2e-19
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
M +VKVVKNK YFKRYQVK++RRREG TDY ARK L++ KNK N K R IVR +N +
Sbjct: 1 MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFIVRKTNNQI 60
Query: 222 TCQVAYSRXEG 254
CQ+A S EG
Sbjct: 61 ICQIASSHIEG 71
Score = 39.5 bits (88), Expect = 0.050
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
I+ A S EL RYG+ GL NYAAAY+TG + +
Sbjct: 74 ILSEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDNQFIGVEKVTSESVAED 133
Query: 440 PVXNGPG---AFRXYLDVGLARTTXG 508
G + +LDVG+ RTT G
Sbjct: 134 GDKEEEGDRKPIKAFLDVGITRTTTG 159
>UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_2951, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 117
Score = 91.5 bits (217), Expect = 1e-17
Identities = 49/101 (48%), Positives = 61/101 (60%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
+ FVK K + Y KR+QVKFKRRR G TDY AR RL+ KNK NTPKYR +VR +NKD+
Sbjct: 12 LAFVKAQKTRAYSKRFQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 71
Query: 222 TCQVAYSRXEGTILCALLIHMSCHVMVXRXXXQIMLQHIQL 344
T Q+ + G + I M+C M + QI Q I L
Sbjct: 72 TAQIISASIAGDM---RPIPMNCLTMGLKWVLQITRQLIVL 109
>UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-green
alga; n=1; Ostreococcus tauri|Rep: T08009 probable
ribosomal protein L5-green alga - Ostreococcus tauri
Length = 331
Score = 84.6 bits (200), Expect = 1e-15
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Frame = +3
Query: 57 VVKNKQYFKRYQVKFKRRREGX--TDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQ 230
V K Y RYQVKF RRR G TDY AR+RL+ KNK N+PKYR +VR +N+DV CQ
Sbjct: 13 VAKTTAYQSRYQVKFARRRLGACKTDYQARQRLITQDKNKYNSPKYRFVVRFTNRDVVCQ 72
Query: 231 VAYSRXEGTI-LCALLIH 281
V Y+ G + +CA H
Sbjct: 73 VVYATLSGDVTICAAYSH 90
Score = 71.7 bits (168), Expect = 1e-11
Identities = 34/82 (41%), Positives = 44/82 (53%)
Frame = +2
Query: 263 VCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVEP 442
+CAAYSHELP+YG+K GLTNYAA Y+TG G++Y+VE
Sbjct: 84 ICAAYSHELPKYGMKAGLTNYAATYATGLLCARRLLTKYGLADAYEGKTEDLGEDYHVEQ 143
Query: 443 VXNGPGAFRXYLDVGLARTTXG 508
F+ +LD GL RT+ G
Sbjct: 144 GDEEARPFKCFLDTGLVRTSTG 165
>UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas
vaginalis|Rep: Ribosomal protein L5 - Trichomonas
vaginalis
Length = 308
Score = 68.1 bits (159), Expect = 1e-10
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +3
Query: 54 KVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQV 233
K+VKN YF R+Q KF+RRRE TDY R +L+ K K KYRL+ R++N V Q+
Sbjct: 4 KLVKNAGYFSRFQTKFRRRREAKTDYVQRTQLIQQDKTKYGAAKYRLVARITNTKVIAQI 63
Query: 234 AYSRXEG 254
+ G
Sbjct: 64 VVAELTG 70
Score = 52.4 bits (120), Expect = 7e-06
Identities = 33/82 (40%), Positives = 40/82 (48%)
Frame = +2
Query: 263 VCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVEP 442
VC A S ELP+YG+K GL+NY AAY+TG +EY +
Sbjct: 74 VCQALSTELPKYGIKLGLSNYPAAYATGLLVARRFLTQMKLADVFKTEIT---EEYLNDE 130
Query: 443 VXNGPGAFRXYLDVGLARTTXG 508
P F+ LDVGLARTT G
Sbjct: 131 ENRRP--FKVILDVGLARTTTG 150
>UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L18p/L5e
family protein - Tetrahymena thermophila SB210
Length = 590
Score = 64.9 bits (151), Expect = 1e-09
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 93 VKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRXE-GTILCA 269
++ K+ +G TDYYARKRL++ K+K NTPKYRL+ R +N + Q+ Y+ + +LCA
Sbjct: 307 IQIKQNYQGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCA 366
Score = 54.8 bits (126), Expect = 1e-06
Identities = 30/83 (36%), Positives = 39/83 (46%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
++CAA S+EL R+GV GL +YAAAY+TG G +NV+
Sbjct: 363 VLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVD 422
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
F+ LD GL RTT G
Sbjct: 423 EDQKEKKPFKAILDAGLVRTTTG 445
Score = 42.7 bits (96), Expect = 0.005
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYY 134
+GFVKV+K K YFKR+Q K++RRR G YY
Sbjct: 13 LGFVKVLKTKAYFKRFQTKYRRRR-GKQLYY 42
>UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L5 -
Encephalitozoon cuniculi
Length = 283
Score = 56.0 bits (129), Expect = 5e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +3
Query: 69 KQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRX 248
+ Y K +QVK +RRREG TDY R ++ N + K+RL+VR++ V CQ+ +
Sbjct: 4 RNYHKNFQVKRRRRREGKTDYKHRTNMIRQDSNSCGSVKHRLVVRITGSRVICQIVAAYM 63
Query: 249 EG 254
+G
Sbjct: 64 DG 65
Score = 42.7 bits (96), Expect = 0.005
Identities = 27/83 (32%), Positives = 37/83 (44%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
++ A S EL RYG+ G TNY+AAY+TG G +
Sbjct: 68 VMVYADSRELERYGINFGATNYSAAYATG-FLIGRRALTAMSLDEVYRPKEIDGTYSVTK 126
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ A R +LD+GLAR+T G
Sbjct: 127 DIDGEKKAPRVFLDIGLARSTRG 149
>UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 53.2 bits (122), Expect = 4e-06
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTG 346
IVCAAY+HELP+ GVK GLTNYAAAY G
Sbjct: 24 IVCAAYAHELPKSGVKVGLTNYAAAYCIG 52
>UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillardia
theta|Rep: 60S ribosomal protein L5 - Guillardia theta
(Cryptomonas phi)
Length = 232
Score = 52.0 bits (119), Expect = 9e-06
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +3
Query: 66 NKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSR 245
N Y R+++K +RRR G TDY R +L+ K K K R+I+R S ++++ Q+ S
Sbjct: 9 NASYHSRFKLKKRRRRIGKTDYKKRMKLIRQDKKKFENKKKRIIIRFSKRNLSLQMVNSN 68
Query: 246 XEGTIL 263
+G +
Sbjct: 69 VDGDFI 74
>UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1;
Theileria sp. CAAS-2005|Rep: Putative uncharacterized
protein - Theileria sp. CAAS-2005
Length = 255
Score = 52.0 bits (119), Expect = 9e-06
Identities = 31/80 (38%), Positives = 36/80 (45%)
Frame = +2
Query: 269 AAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVEPVX 448
+A S EL YGVK GLTNYAAAY TG G+ Y+VE
Sbjct: 26 SADSAELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKLEVDGEVYHVEEEE 85
Query: 449 NGPGAFRXYLDVGLARTTXG 508
N F+ LDVG+ T G
Sbjct: 86 NERRPFKALLDVGVKNVTTG 105
>UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus
musculus|Rep: PREDICTED: cadherin 18 - Mus musculus
Length = 339
Score = 50.4 bits (115), Expect = 3e-05
Identities = 32/87 (36%), Positives = 46/87 (52%)
Frame = +3
Query: 90 QVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRXEGTILCA 269
+++F+R +EG TDYYARKRL + KN+ NTP+ + + ++ C
Sbjct: 36 KLRFRRWQEGKTDYYARKRLEIQDKNEYNTPEXDDSSCNXQRYHLPDCIXKKFXSSVPC- 94
Query: 270 LLIHMSCHVMVXRXXXQIMLQHIQLXC 350
+HM MV + IMLQ I L C
Sbjct: 95 --MHMKFQNMVXKLAXNIMLQPIALAC 119
>UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31;
Archaea|Rep: 50S ribosomal protein L18P - Aeropyrum
pernix
Length = 214
Score = 42.3 bits (95), Expect = 0.007
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +3
Query: 84 RYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRXEG 254
RY+V +RRREG T+YY R RLV + K R+ VR+SN+ + Q +R EG
Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLV-------KSGKPRMAVRISNEYLWVQFLEARIEG 55
>UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1;
Methanoculleus marisnigri JR1|Rep: Ribosomal protein
L18P/L5E - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 175
Score = 41.1 bits (92), Expect = 0.016
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +3
Query: 84 RYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRXEG 254
RY V F+RR EG TDYY R L+ TP R++VR +N+ + Q+ EG
Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLL-----SSGTP--RMVVRKTNRQIIVQLVVPEVEG 55
>UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12;
Archaea|Rep: 50S ribosomal protein L18P - Methanosarcina
mazei (Methanosarcina frisia)
Length = 174
Score = 39.5 bits (88), Expect = 0.050
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 84 RYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQVAYSRXEGTI 260
RY+V F+RRREG T+Y+ R +L++ ++ R++VR S ++V Q+ EG I
Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDI 57
>UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L18P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 187
Score = 38.3 bits (85), Expect = 0.12
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 84 RYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQV 233
RY+V +RRRE TDY+ R RL+ + K RL+ R SNK V Q+
Sbjct: 6 RYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQL 48
>UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2;
environmental samples|Rep: Ribosomal protein L18/L5 -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 171
Score = 37.1 bits (82), Expect = 0.27
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 81 KRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQV 233
K +++FKRRR G TDY R R++ R +VR+SN TCQ+
Sbjct: 5 KNQRLRFKRRRTGETDYRRRMRMLRGGAT-------RAVVRVSNTQTTCQL 48
>UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2;
Methanobacteriaceae|Rep: 50S ribosomal protein L18P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 193
Score = 35.1 bits (77), Expect = 1.1
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 87 YQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRL-SNKDVT 224
Y+V+FKRRREG T+Y R +LV + K R++VR+ SN +T
Sbjct: 7 YKVQFKRRREGKTNYNKRYKLV-------DLDKTRMVVRITSNHTIT 46
>UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella
natans|Rep: Ribosomal protein L5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 252
Score = 34.7 bits (76), Expect = 1.4
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYAR--KRLVVXXKNKXNTPKYRLIVRLSNK 215
M + K++KN YF ++ VK +R R+ T Y R + NK + K+R +N
Sbjct: 1 MIYQKIIKNASYFSKFVVKHRRNRKFLTKYGKSYDSRFLKSYTNK--SKKFRSYFTTTNT 58
Query: 216 DVTCQVAYSRXEGTILCA 269
+++ + +S G + A
Sbjct: 59 NLSGVITFSSLSGDTIVA 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,409,123
Number of Sequences: 1657284
Number of extensions: 7022697
Number of successful extensions: 11528
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11518
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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