Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   104   7e-24
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   104   7e-24
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   7.3  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  104 bits (250), Expect = 7e-24
 Identities = 46/76 (60%), Positives = 55/76 (72%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           M F+K VK+  YF RYQ K++RRREG TDYYARKRL+   KNK N PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 222 TCQVAYSRXEGTILCA 269
           TCQ+  SR  G  + A
Sbjct: 61  TCQIVSSRVNGDYVLA 76



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +2

Query: 257 HIVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNV 436
           +++  A+S ELPRYG+K GL N+ AAY+TG                        G+    
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132

Query: 437 EPVXNGPGAFRXYLDVGLARTTXG 508
           E + +GP  F+ +LDVGL RT+ G
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           SRVFGAMKGA DGG
Sbjct: 157 SRVFGAMKGASDGG 170


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  104 bits (250), Expect = 7e-24
 Identities = 46/76 (60%), Positives = 55/76 (72%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           M F+K VK+  YF RYQ K++RRREG TDYYARKRL+   KNK N PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 222 TCQVAYSRXEGTILCA 269
           TCQ+  SR  G  + A
Sbjct: 61  TCQIVSSRVNGDYVLA 76



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +2

Query: 257 HIVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNV 436
           +++  A+S ELPRYG+K GL N+ AAY+TG                        G+    
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132

Query: 437 EPVXNGPGAFRXYLDVGLARTTXG 508
           E + +GP  F+ +LDVGL RT+ G
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           SRVFGAMKGA DGG
Sbjct: 157 SRVFGAMKGASDGG 170


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 281 VNKQRTQYGTFXPRVGHLACYIFVGETHN 195
           V K+R  Y T    V HLAC+I   E  N
Sbjct: 201 VTKERL-YNTLAHEVCHLACWIIDNEMQN 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,414
Number of Sequences: 5004
Number of extensions: 30142
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)