Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    89   2e-18
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    87   1e-17
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    27   9.9  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/75 (57%), Positives = 51/75 (68%)
 Frame = +3

Query: 45  GFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVT 224
           GFVK  K   YFKR+QVKFKRRR+G TDY AR RL    KNK NTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 225 CQVAYSRXEGTILCA 269
            Q+ Y+   G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 38/83 (45%), Positives = 45/83 (54%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           ++ AAYSHELPRYG++ GLTNYAAAY TG                        G++Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVE 131

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
           P  +    FR  LDVGL RTT G
Sbjct: 132 PA-DERRPFRALLDVGLIRTTTG 153



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGA+DGG
Sbjct: 154 NRVFGALKGALDGG 167


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 42/75 (56%), Positives = 50/75 (66%)
 Frame = +3

Query: 45  GFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVT 224
           GFVK  K   Y KR+QVKFKRRR+G TDY AR RL    KNK NTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 225 CQVAYSRXEGTILCA 269
            Q+ Y+   G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 38/83 (45%), Positives = 45/83 (54%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           ++ AAYSHELPRYG++ GLTNYAAAY TG                        G++Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVE 131

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
           P  +    FR  LDVGL RTT G
Sbjct: 132 PA-DERRPFRALLDVGLIRTTTG 153



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGA+DGG
Sbjct: 154 NRVFGALKGALDGG 167


>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
            18456292-18456360,18456528-18456605,18456703-18456789,
            18456881-18456931,18457021-18457092,18457177-18457304,
            18458194-18458275,18458705-18458754,18459043-18459096,
            18459586-18459675,18459903-18459983,18460443-18460538,
            18460960-18461022,18461313-18461402,18461630-18461698,
            18462051-18462291
          Length = 1082

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
 Frame = +3

Query: 66   NKQYFKRYQVKFKR-RREGXTDYYARKR----LVVXXKNK-XNTPKYRLIVRLSNKDVTC 227
            N + FK++QV+ KR  R    +    K     L +  K K     KY +IV    ++ TC
Sbjct: 781  NSKIFKKFQVELKRTTRLQLIEVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTC 840

Query: 228  QVAYSRXEGTILCALLIHMSCHVMVXRXXXQIMLQHIQLXCY*HXDCFKD 377
              +    +G +LC+ ++ +  H+ + +   + ++   +   Y     F+D
Sbjct: 841  VCSKFEKDG-LLCSHILKIMLHLNIMKIPEKYIIDRWRKKDYKEKSDFED 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,351
Number of Sequences: 37544
Number of extensions: 197565
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)