Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          96   1e-20
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              87   9e-18
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   5.8  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 46/83 (55%), Positives = 51/83 (61%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           I+CAAY+HELPRYGVK GLTNYAAAY TG                        GDEYNVE
Sbjct: 11  IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVE 70

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
            +   PGAFR +LDVGLART+ G
Sbjct: 71  SIDGSPGAFRCFLDVGLARTSTG 93



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGAVDGG
Sbjct: 94  ARVFGALKGAVDGG 107


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 42/83 (50%), Positives = 49/83 (59%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           ++ +AY+HELP +GVK GLTNYAAAY TG                        GDEYNVE
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVE 165

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
            V   PGAFR +LDVGLART+ G
Sbjct: 166 SVDGSPGAFRCFLDVGLARTSTG 188



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = +3

Query: 105 RRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDVTCQ 230
           RR +G TDYYARKRL+   KNK NTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGAVDGG
Sbjct: 189 ARVFGALKGAVDGG 202


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 45   GFVKVVKNKQYFKRYQVKFKRRREGXTDY 131
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,243
Number of Sequences: 59808
Number of extensions: 237366
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)