Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   133   3e-33
CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein ...    24   3.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   5.0  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  133 bits (322), Expect = 3e-33
 Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           MGFVKVVKNKQYFKRYQV+F+RRREG TDYYARKRL+   KNK NTPK+RLIVRLSN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 222 TCQVAYSRXEG-TILCALLIH 281
           TCQ+AY R EG  I+CA   H
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSH 81



 Score = 99.5 bits (237), Expect = 6e-23
 Identities = 50/83 (60%), Positives = 51/83 (61%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           IVCAAYSHELPRYGVK GLTNYAAAY TG                        G+EY VE
Sbjct: 74  IVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVE 133

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
           PV  GP AFR YLDVGLARTT G
Sbjct: 134 PVDEGPAAFRCYLDVGLARTTTG 156



 Score = 32.7 bits (71), Expect = 0.008
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           SRVFGAMKGAVDGG
Sbjct: 157 SRVFGAMKGAVDGG 170


>CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein
           protein.
          Length = 277

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 162 KNKXNTPKYRLIVRLS---NKDVTCQVAYSRXEGTILCALLI 278
           KN   T   +L + +S   N  +  Q+ YS+ +G++ C L+I
Sbjct: 43  KNSSTTEPKQLSLVISYQPNAHLGEQITYSKTQGSVECTLVI 84


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 549 PTVNSTLHSSKDTRPX-VVRAKPTSKXHLXAPGP 451
           P  + +L+ S    P  VV + PT   HL +P P
Sbjct: 686 PPAHGSLNLSAGGSPVAVVSSSPTGGHHLASPSP 719


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,898
Number of Sequences: 2352
Number of extensions: 9177
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)