Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060404.seq
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 131 1e-30
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 131 1e-30
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 131 1e-30
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 131 1e-30
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 131 1e-30
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 131 1e-30
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 131 1e-30
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 131 2e-30
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 94 3e-19
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 52.4 bits (120), Expect = 1e-06
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAA 334
IVCAAY+HELP+YGVK GLTNYAAA
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 131 bits (317), Expect = 1e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 67
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 68 ICQIAYARIEGDMIVCAAYAH 88
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 81 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 140
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 141 SIDGQPGAFTCYLDAGLARTTTG 163
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 131 bits (316), Expect = 2e-30
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREG TDYYARKRLV+ KNK NTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRXEG-TILCALLIH 281
CQ+AY+R EG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCARYAH 81
Score = 91.9 bits (218), Expect = 1e-18
Identities = 45/83 (54%), Positives = 48/83 (57%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCA Y+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 74 IVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 93.9 bits (223), Expect = 3e-19
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
IVCAAY+HELP+YGVK GLTNYAAAY TG GDEYNVE
Sbjct: 24 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 83
Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
+ PGAF YLD GLARTT G
Sbjct: 84 SIDGQPGAFTCYLDAGLARTTTG 106
Score = 39.5 bits (88), Expect = 0.008
Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +3
Query: 192 LIVRLSNKDVTCQVAYSRXEG-TILCALLIH 281
+IVR++N+D+ CQ+AY+R EG I+CA H
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAH 31
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,877,057
Number of Sequences: 237096
Number of extensions: 1137270
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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