Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   122   2e-28

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  122 bits (293), Expect = 2e-28
 Identities = 55/76 (72%), Positives = 63/76 (82%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           MG VKV+KNK YFKRYQVK +RRREG TDYYARKRL V  KNK NTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 222 TCQVAYSRXEGTILCA 269
             Q+AYS+ EG ++ A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 38/83 (45%), Positives = 46/83 (55%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           +V +AYSHELPRYG+K GLTNYAAAY+TG                        G++YNVE
Sbjct: 74  VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
                   F+  LD+GLARTT G
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,702
Number of Sequences: 27780
Number of extensions: 176597
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)