Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060404.seq
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...    93   1e-19
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...    92   2e-19

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 43/76 (56%), Positives = 53/76 (69%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           M FVK  K+  YFKRYQVKF+RRR+G TDY AR RL+   KNK NTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 222 TCQVAYSRXEGTILCA 269
             Q+  +   G I+ A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 34/83 (40%), Positives = 44/83 (53%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           +  +AY+HELP+YG+  GLTNYAAAY TG                        G++++VE
Sbjct: 74  VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVE 133

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
           P  +    FR  LDVGL RTT G
Sbjct: 134 PT-DSRRPFRALLDVGLIRTTTG 155



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGA+DGG
Sbjct: 156 NRVFGALKGALDGG 169


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 43/76 (56%), Positives = 53/76 (69%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGXTDYYARKRLVVXXKNKXNTPKYRLIVRLSNKDV 221
           M FVK  K+  YFKRYQVKF+RRR+G TDY AR RL+   KNK NTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 222 TCQVAYSRXEGTILCA 269
             Q+  +   G I+ A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 34/83 (40%), Positives = 44/83 (53%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKXGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXGDEYNVE 439
           +  +AY+HELP+YG+  GLTNYAAAY TG                        G++++VE
Sbjct: 74  VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVE 133

Query: 440 PVXNGPGAFRXYLDVGLARTTXG 508
           P  +    FR  LDVGL RTT G
Sbjct: 134 PT-DSRRPFRALLDVGLIRTTTG 155



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGG 549
           +RVFGA+KGA+DGG
Sbjct: 156 NRVFGALKGALDGG 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,025
Number of Sequences: 28952
Number of extensions: 158973
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)