Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060403.seq
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   4e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                95   3e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   7e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.16 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.28 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.28 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.87 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   4.6  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   8.1  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +1

Query: 265 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 444
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 445 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 543
           TREHA+L  +LGV QLIV +NK   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (239), Expect = 9e-22
 Identities = 43/85 (50%), Positives = 61/85 (71%)
 Frame = +1

Query: 256 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 435
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 436 NGQTREHALLAFTLGVKQLIVGVNK 510
            GQTREHA+LA T GVK L++ VNK
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNK 291



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 135 YKCGGIDKRTIEKFEXEAQEMGKGSFKYAWVLDKLKAERE 254
           Y  G +DKRT+EK+E EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 50/74 (67%), Positives = 53/74 (71%)
 Frame = +3

Query: 51  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEXEAQEMGKGSFKYAWVL 230
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFE E+ E+   S      +
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59

Query: 231 DKLKAEREXYHNRY 272
            KLK E    H  Y
Sbjct: 60  SKLKFELPCTHKIY 73


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +1

Query: 256 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 372
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 195 MGKGSFKYAWVLDKLKAERE 254
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 256 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 307 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 256 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 402
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 51  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 146
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 301 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 316 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 495
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 496 VGVNK 510
           +  NK
Sbjct: 123 ILQNK 127


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 6   ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 137
           E+    + ++R  P   ++ T I + V+G+V+SGKST  G L Y
Sbjct: 92  EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIV 396
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 75   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 173
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 137
           ELG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 48  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEXEAQEMGKGSFKYA 221
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 307 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 450
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -1

Query: 384  SAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXHAQPLVCPIPKHI 214
            ++++  G+   +  + S     N G  +  +F  PES  D +  H +P++ P+P+ I
Sbjct: 1897 ASVAGAGTSPFISSDGSAKPFANAGAKLFEAFGSPESGQDIEEPHFEPII-PLPEKI 1952


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,212
Number of Sequences: 59808
Number of extensions: 344805
Number of successful extensions: 798
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)