Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060402.seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    26   4.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   7.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.5  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.5  

>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 333 DANGLPQVVKVLETTSKPLIAQIEAEPKESPVKIVTV 443
           D  G+P ++ V ++  K L    E +P+E+ V  VTV
Sbjct: 90  DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTV 126


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 457 SNVQRYLFQPVLQDLGIVHTNK 522
           SN  RY ++P+L++  ++H N+
Sbjct: 439 SNQSRYNWEPILENRSLLHLNR 460


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
 Frame = +3

Query: 216 LFRHQQLSYVVLMNINGRPNSRSVEKMSQTNST---INYLIHDANGLPQ--------VVK 362
           L   Q+ S  +L    GRP  +  E     N T    +  +H ++  PQ        V  
Sbjct: 413 LNNQQRESAPLLPRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSP 472

Query: 363 VLETTSK-PLI--AQIEAEPKESPVKIVTVSPVPVKCAKIPVPASFARFGNCPYKQKPAQ 533
           +L ++ + PL+  +Q    PK+   ++  +SP   +    P P   + F + PY +  +Q
Sbjct: 473 LLPSSDRLPLLRQSQFTPPPKKPNFEVAIISPKKSQHKLYPNPVVESVFNDVPYSEIDSQ 532


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 279  RSVEKMSQTN--STINYLIHDANGLPQVVKVLET-TSKPLIAQIEA-EPKESPVKI 434
            + V++++  N    +NYL  D   LP++ K LE+   K  + Q++A + KE   K+
Sbjct: 1064 KGVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKV 1119


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 206 YLLNSYDQNHRSKWRQKYG 150
           YL    D++   +WR KYG
Sbjct: 759 YLFTRIDESMEEEWRSKYG 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,769
Number of Sequences: 5004
Number of extensions: 49906
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)