Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060402.seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1037 + 33682048-33682188,33682317-33682358,33683143-336833... 31 0.44
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 3.1
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 28 4.1
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 28 5.4
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 7.2
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 27 7.2
10_06_0043 - 10026817-10027869 27 9.5
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 27 9.5
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 9.5
>02_05_1037 +
33682048-33682188,33682317-33682358,33683143-33683328,
33684442-33684657,33684803-33684949,33685525-33685866,
33687257-33687361
Length = 392
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 213 NLFRHQQLSYVVLMNINGRPNSRSVEKMSQTNSTINYLIHDANGLPQVVKVLETTSK-PL 389
N+FR LSY++L I G+ ++ TNS N + N QV K ++ T K PL
Sbjct: 5 NIFRVALLSYIIL-TIGGK-------ELKSTNSGENTGLTFTN--QQVNKTVQPTFKHPL 54
Query: 390 IA--QIEAEPKESPVKIVTVSPV 452
+I+ EP SP+++ SP+
Sbjct: 55 FKDHEIQMEPSSSPIRLDIKSPL 77
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 440 CITCSGQMCKDTCSSQFCKI 499
CIT G +CK C +FC+I
Sbjct: 750 CITKQGDICKTFCRIRFCRI 769
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 270 PNSRSVEKMSQTNSTINYLIHDANGLPQVVKV 365
P +V K+ TN+ + ++ H G P VVKV
Sbjct: 33 PRDTNVRKLFTTNADLFFVPHGVGGEPDVVKV 64
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 427 LKLLLYHLFRSNVQRYLFQPVLQDLGIVHTNKNLHKD 537
LK +L+H S V+ Y+ Q +L+ L H N LH+D
Sbjct: 125 LKKVLHHSTPSQVKYYMEQ-LLKGLHYCHVNNVLHRD 160
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 277 QGVWRKCPKLIVQ*ITLSMML---TDFLKW*KCWKLQVNH*LLKSKQNRKRAQLKLLLYH 447
+G+W P LIV + S+ML T+FLKW +K+ K ++ +++ +K +H
Sbjct: 714 KGIWG--PHLIV--VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWMKPNYFH 769
Query: 448 L 450
+
Sbjct: 770 V 770
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 318 NYLIHDANGL-PQVVKVLETTSKPLIAQIEAEPKESPVKIVTVSPVP 455
N + DA + P + LET K ++ + K SPV +T P+P
Sbjct: 306 NQALKDAGAVVPTSYEALETAIKETFEKLVEDGKISPVTEITPPPIP 352
>10_06_0043 - 10026817-10027869
Length = 350
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 425 WALFRFCF-DLSNQWFTCSFQHFH 357
W LF F D + QW+T S + FH
Sbjct: 80 WKLFPFSLRDKAKQWYTMSVKKFH 103
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 425 WALFRFCF-DLSNQWFTCSFQHFH 357
W LF F D + QW+T S + FH
Sbjct: 80 WKLFPFSLRDKAKQWYTLSVKKFH 103
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 366 LETTSKPLIAQIEAEP--KESPVKIVTVSPVPVK 461
++T++K L+A++ +E E P I PVPVK
Sbjct: 1430 IKTSNKRLVAKVSSEAFETEGPESIEKAKPVPVK 1463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,653
Number of Sequences: 37544
Number of extensions: 283895
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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