Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060402.seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64) 31 0.79
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 27 9.7
SB_46393| Best HMM Match : PAN (HMM E-Value=3.6) 27 9.7
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59) 27 9.7
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 354 VVKVLETTSKPLIAQIEAEPKESPVKIVTVSPVPVKCAKIPVPASFARFGNCP 512
+V+V+ SKP+IA + + K +V + + C KI + SF ++G+ P
Sbjct: 336 LVEVIIHCSKPIIAAVNGDAKGFGTSLVALCDIVYVCEKINLELSFTKWGHTP 388
>SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)
Length = 423
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 261 NGRPNSRSVEKMSQTNSTINYL-IHDANGLPQVVK-VLETTSKPLIAQIEAEPKESPVKI 434
N + +R +++ N + L ++ + GLP++ +LE + P+ + EP+ESP K+
Sbjct: 248 NCQDETRKNPTIAKKNIELTELKLYKSLGLPELASGILERKTSPVAPTMVKEPQESPQKL 307
Query: 435 VTVSP 449
T P
Sbjct: 308 STSLP 312
>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 440 SNNFNWALFRFCFDLSNQWFTCSFQHFHHLRKSVSIMDKVIYCTISLGHFLHTP*IW 270
S +FN + RF F +SN +T H + + + K+ C ++ F+H IW
Sbjct: 129 SYDFNDSSRRFLFPVSNSLYTFVDWHNNEMVHEAKLDAKICPCDANIVAFIHRNDIW 185
>SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 333 DANGLPQVVKVLETTSKPLIAQIEAEPKESPV 428
DA GLP+ ++V +K QIE PKE+ V
Sbjct: 247 DAEGLPKEIEVSPKVTKVSPKQIETSPKEAEV 278
>SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 473 YLCTFDRNR*YSNNFNWALFRFCFDLSNQWFTCSFQH 363
Y F+R R Y NN FR C D+SN+ QH
Sbjct: 115 YSTQFNR-RDYYNNLLTLTFRLCLDISNRHIKAYVQH 150
>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -3
Query: 515 VWTIPKSCKTGWNRYLCTFDRNR*YSNNFNWALFRFCF-------DLSNQW-FTCSFQH 363
VWT+ KS T Y + +N NW+ +R ++S W TCSF H
Sbjct: 579 VWTLVKSYSTPQFLYTALYVNAPKNQDNPNWSQYRLSLPRMEALQNVSTHWRVTCSFPH 637
>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 377 K*TTDCSNRSRTEREPS*NCYCITCSGQMCKDTCSSQFCKIWELSIQTKTC 529
K T C ++R + + C TC G++ C +Q CK +QT+ C
Sbjct: 10 KQTRKCKVQTRKCKVQTCKCKAQTCKGKVQTCKCKAQTCK---GKVQTRKC 57
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 441 VSPVPVKCAKIPV--PASFARFGNCP 512
++PVP++C +PV P A +CP
Sbjct: 141 IAPVPIRCRPVPVGEPLILAPVSDCP 166
>SB_46393| Best HMM Match : PAN (HMM E-Value=3.6)
Length = 324
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -3
Query: 515 VWTIPKSCKTGWNRYLCTFDRNR*YSNNFNWALFRFCF-------DLSNQW-FTCSFQH 363
VWT+ KS T Y + +N NW+ +R ++S W TCSF H
Sbjct: 152 VWTLVKSYSTPQFLYTALYVNAPKNQDNPNWSQYRLSLPRMEALQNVSTHWRVTCSFPH 210
>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
Length = 341
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 377 K*TTDCSNRSRTEREPS*NCYCITCSGQMCKDTCSSQFCKIWELSIQTKTC 529
K T C ++R + + C TC G++ C +Q CK +QT+ C
Sbjct: 10 KQTRKCKVQTRKCKVQTCKCKAQTCKGKVQTCKCKAQTCK---GKVQTRKC 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,228,091
Number of Sequences: 59808
Number of extensions: 353404
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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