Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060402.seq
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL158822-4|CAI39240.1| 1315|Homo sapiens potassium channel, subf...    30   6.0  
AB037843-1|BAA92660.1| 1151|Homo sapiens KIAA1422 protein protein.     30   6.0  

>AL158822-4|CAI39240.1| 1315|Homo sapiens potassium channel,
           subfamily T, member 1 protein.
          Length = 1315

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 431 FNWALFRFCFDLSNQWF-TCSFQHFHHLRKSVSIMDKVIYCTI---SLGHFLHTP*IWTS 264
           FN  L  FC  L   +  TC  QH     +++S++    +C +   ++G+   TP IW S
Sbjct: 334 FNQVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPS 393


>AB037843-1|BAA92660.1| 1151|Homo sapiens KIAA1422 protein protein.
          Length = 1151

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 431 FNWALFRFCFDLSNQWF-TCSFQHFHHLRKSVSIMDKVIYCTI---SLGHFLHTP*IWTS 264
           FN  L  FC  L   +  TC  QH     +++S++    +C +   ++G+   TP IW S
Sbjct: 290 FNQVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPS 349


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,201,502
Number of Sequences: 237096
Number of extensions: 1781739
Number of successful extensions: 11114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11113
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)