Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060402.seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80843-1|AAB37966.1|  410|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical...    28   3.7  
AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    27   8.6  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    27   8.6  

>U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical
           protein T19H12.6 protein.
          Length = 619

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 535 LCAGFCLYGQFPNLAKLAGTGIFAHLTGTGDTVTIL 428
           + A FCL G  PN A L G  +    T  G+  TI+
Sbjct: 250 IAASFCLMGAMPNKASLGGGLMMTVKTKNGNATTII 285


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 282 SVEKMSQTNSTINY--LIHDANGLPQVVKVLETTSKPLIAQIEAEPKESPVKIVTVSPVP 455
           S++  S  NS  NY  L H  N  P ++     + +P++A     P++ P +I+T + V 
Sbjct: 131 SIQSSSSQNSHENYDNLYHTDNSSPLLLFQPPPSLRPVLA-----PQQPPPQIITTTTVS 185

Query: 456 VKCAKIPVPASFARFGNCPYKQKP 527
                 P  A   R    P   KP
Sbjct: 186 SYSTPQPQKAQLVRGEKPPLLPKP 209


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 282 SVEKMSQTNSTINY--LIHDANGLPQVVKVLETTSKPLIAQIEAEPKESPVKIVTVSPVP 455
           S++  S  NS  NY  L H  N  P ++     + +P++A     P++ P +I+T + V 
Sbjct: 131 SIQSSSSQNSHENYDNLYHTDNSSPLLLFQPPPSLRPVLA-----PQQPPPQIITTTTVS 185

Query: 456 VKCAKIPVPASFARFGNCPYKQKP 527
                 P  A   R    P   KP
Sbjct: 186 SYSTPQPQKAQLVRGEKPPLLPKP 209


>U80843-1|AAB37966.1|  410|Caenorhabditis elegans Hypothetical
           protein C32B5.10 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 180 ILVIRIE*VLFNLFRHQQLSYVVLMNINGRPNSRSVEKMSQTNSTI 317
           ++  R E + +N+  HQ   Y++    +GR ++  V+K+S  N  I
Sbjct: 183 LITFRDEKLSYNMKLHQAFKYLIFKLFSGRRDAIQVKKLSIENKGI 228


>AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical
           protein Y71F9B.14 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 345 LPQVVKVLETTSKPLIAQI-EAEPKESPVKIVTVSPVPVKCAKIPVP 482
           +P  V   ETT   ++ ++ E     +P + +T +P PVK    P P
Sbjct: 324 VPPAVITTETTPAEVVTELLETTTAPAPAEALTAAPAPVKEPATPEP 370


>AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical
           protein W08E12.3 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 320 LPYP*C*RTSSSGESAGNYK*T-TDCSNRSRTEREPS*N--CYCITCSGQMCKDTCSSQF 490
           LP P C   +  G S  N      +C  +    + P+ N  C C  C+G +C   C+S  
Sbjct: 32  LPPPPCFGGNCGGCSGNNCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNS-- 89

Query: 491 CKIWELSIQTKTC 529
           C    + IQ   C
Sbjct: 90  CPPQPIFIQPSQC 102


>AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.4 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 320 LPYP*C*RTSSSGESAGNYK*T-TDCSNRSRTEREPS*N--CYCITCSGQMCKDTCSSQF 490
           LP P C   +  G S  N      +C  +    + P+ N  C C  C+G +C   C+S  
Sbjct: 32  LPPPPCFGGNCGGCSGNNCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNS-- 89

Query: 491 CKIWELSIQTKTC 529
           C    + IQ   C
Sbjct: 90  CPPQPIFIQPSQC 102


>AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.5 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 320 LPYP*C*RTSSSGESAGNYK*T-TDCSNRSRTEREPS*N--CYCITCSGQMCKDTCSSQF 490
           LP P C   +  G S  N      +C  +    + P+ N  C C  C+G +C   C+S  
Sbjct: 32  LPPPPCFGGNCGGCSGNNCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNS-- 89

Query: 491 CKIWELSIQTKTC 529
           C    + IQ   C
Sbjct: 90  CPPQPIFIQPSQC 102


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +2

Query: 365 AGNYK*TTDCSNRSRTEREP--S*NCYCITCSGQMCKDTCSSQFC 493
           +G +       N  R E +P      YC  C G++CK   +  FC
Sbjct: 425 SGRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFC 469


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 422 PS*NCYCITCSGQM-CKDTCS---SQFCKIWELSIQTKTC 529
           PS NC C +CSG + C D C    +Q C + + S+    C
Sbjct: 50  PSGNCGCGSCSGFVTCPDRCQPMCTQACVMAKTSVCVDQC 89


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 309 STINYLIHDANGLPQVVKVLETTSKPLIAQIEAEPKESPVKIVT 440
           STIN L +  N   +   VLE    PL+ Q+  E   +  KI+T
Sbjct: 329 STINELGYMGNRFSEAGIVLEKIQSPLLFQLVKEALSTQPKIIT 372


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 381 KPLIAQIEAEPKESPVKIVTVSPV 452
           +P++A++ AEP+  PV +   +PV
Sbjct: 480 EPVLAEVSAEPQRPPVTLSMTAPV 503


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 381 KPLIAQIEAEPKESPVKIVTVSPV 452
           +P++A++ AEP+  PV +   +PV
Sbjct: 478 EPVLAEVSAEPQRPPVTLSMTAPV 501


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 381 KPLIAQIEAEPKESPVKIVTVSPV 452
           +P++A++ AEP+  PV +   +PV
Sbjct: 480 EPVLAEVSAEPQRPPVTLSMTAPV 503


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 381 KPLIAQIEAEPKESPVKIVTVSPV 452
           +P++A++ AEP+  PV +   +PV
Sbjct: 478 EPVLAEVSAEPQRPPVTLSMTAPV 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,868
Number of Sequences: 27780
Number of extensions: 284577
Number of successful extensions: 832
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)