Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060402.seq
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   6.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   6.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 172 DL*FWSYELSRYYL 213
           D+  W +E S+YY+
Sbjct: 1   DIALWKFETSKYYV 14


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 172 DL*FWSYELSRYYL 213
           D+  W +E S+YY+
Sbjct: 17  DIALWKFETSKYYV 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 172 DL*FWSYELSRYYL 213
           D+  W +E S+YY+
Sbjct: 74  DIALWKFETSKYYV 87


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 237 SYVVLMNINGRPNSRSV 287
           ++V++M  NG P+S +V
Sbjct: 74  TFVIIMKFNGVPSSLNV 90


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 264  GRPNSRSVEKMSQTNSTINYLIHDANG 344
            G  NSR   +MS+    ++  I+D +G
Sbjct: 1252 GTSNSRGAAQMSKVPRDVSEGIYDGSG 1278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,587
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)