Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060402.seq
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21860.1 68414.m02736 multi-copper oxidase type I family prot...    30   1.1  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    29   1.5  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   2.6  
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family...    29   2.6  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    28   3.4  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   3.4  
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot...    27   7.9  

>At1g21860.1 68414.m02736 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 538

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 350 RKSVSIMDKVIYCTISLGHFLHTP*IWTSIYVHKNNVGQLLMTKQI 213
           RK  ++ D ++ CTI +      P  WT+IY+  +NVG   M  +I
Sbjct: 456 RKVYNLNDAILRCTIQV-----YPRSWTAIYIALDNVGMWNMRSEI 496


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 366  LETTSKPL-IAQIEAEPKESPVKIVTVSPV 452
            LE T KP+ + Q EAEPKE PV  V  + V
Sbjct: 1340 LEDTEKPVDVPQEEAEPKEPPVDEVIAASV 1369


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 277 QGVWRKCPKLIVQ*ITLSMML---TDFLKW*KCWKLQVNH*LLKSKQNRKRAQLKLLLYH 447
           +G+W   P LIV  +  S+ML   T+FLKW   +K+       K ++ +++  +KL  +H
Sbjct: 582 KGIWG--PHLIV--VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFH 637

Query: 448 L 450
           +
Sbjct: 638 V 638


>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
           protein identical to cDNA nematode responsive protein
           GI:2213418
          Length = 695

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 255 NINGRPNSRSVEKMSQTNSTINYLIHDANGLPQVVKVLETTSK 383
           NIN  P        + T +T+     D  G+ +V+KV+   +K
Sbjct: 628 NINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPHNAK 670


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 428 NWALFRFCFDLSNQWFTCSFQHFHHLRKSVSI-MDKVIYCTISLGHFLH 285
           NW LF+ CFD   +W       F ++ K+V I +  +I  T+ L   +H
Sbjct: 524 NWELFKACFD--REWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMH 570


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 366  LETTSKPL-IAQIEAEPKESPV 428
            LE T KP+ + Q EAEPKE PV
Sbjct: 1587 LEDTEKPVDVPQEEAEPKEPPV 1608


>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 350 RKSVSIMDKVIYCTISLGHFLHTP*IWTSIYVHKNNVG 237
           RK  ++ D V  CT+ +      P  WT+IYV  +NVG
Sbjct: 456 RKVYNLNDAVSRCTVQV-----YPRSWTAIYVSLDNVG 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,331
Number of Sequences: 28952
Number of extensions: 253726
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)