Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060401.seq
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.84 
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                    29   1.9  
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)                   27   5.9  

>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 69  KYTIYFFYPILFTLVKPT 16
           KY ++FFYP+ FT V PT
Sbjct: 84  KYLVFFFYPLDFTFVCPT 101


>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 69  KYTIYFFYPILFTLVKPT 16
           KY + FFYP+ FT V PT
Sbjct: 82  KYVVLFFYPLDFTFVCPT 99


>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
          Length = 842

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 MIWLPFTLSEHNY*LVVKKLTDCHSYIMPXYI 200
           M WLP  +S HN  L +++ +D  +   P Y+
Sbjct: 1   MCWLPLRMSVHNSLLYMQRASDTGACHSPPYV 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,794
Number of Sequences: 59808
Number of extensions: 104333
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)