Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060401.seq
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...    29   1.7  
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
          protein 2 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 69 KYTIYFFYPILFTLVKPT 16
          KY + FFYP+ FT V PT
Sbjct: 34 KYVVLFFYPLDFTFVCPT 51


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 69  KYTIYFFYPILFTLVKPT 16
           K+ + FFYP+ FT V PT
Sbjct: 63  KWLVMFFYPLDFTFVCPT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,913
Number of Sequences: 27780
Number of extensions: 87763
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)