Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060401.seq
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...    29   1.2  
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...    29   1.2  
At5g35604.1 68418.m04242 hypothetical protein                          27   8.5  
At1g62085.1 68414.m07006 mitochondrial transcription termination...    27   8.5  

>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 69  KYTIYFFYPILFTLVKPT 16
           KY I FFYP+ FT V PT
Sbjct: 111 KYVILFFYPLDFTFVCPT 128


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 69  KYTIYFFYPILFTLVKPT 16
           KY I FFYP+ FT V PT
Sbjct: 104 KYVILFFYPLDFTFVCPT 121


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 43  WIKKVNRIFILKVNH-ISASAK*SGCHSHYQNIIISW 150
           W   +   ++L  +H + A++K +    HY+ +++SW
Sbjct: 180 WRPTIRERYLLHAHHTVRANSKFNNMVEHYEGLLLSW 216


>At1g62085.1 68414.m07006 mitochondrial transcription termination
           factor family protein / mTERF family protein contains
           Pfam profile PF02536: mTERF
          Length = 461

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 281 VYTLXLNXSRLVKIE*KSHLGIP*STIXXSNPVYLFFXY 397
           +Y+L L+  RLV+++   HL +P + +  ++P    F Y
Sbjct: 1   MYSLILHGKRLVQLKKCRHLSVPVNLLEKASPFSNSFSY 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,183,866
Number of Sequences: 28952
Number of extensions: 74949
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)