Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060399.seq
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4B559 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_Q85FG2 Cluster: O-succinylbenzoic acid-coa ligase; n=1;...    33   6.2  

>UniRef50_A4B559 Cluster: Putative uncharacterized protein; n=1;
           Alteromonas macleodii 'Deep ecotype'|Rep: Putative
           uncharacterized protein - Alteromonas macleodii 'Deep
           ecotype'
          Length = 362

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 57  YFEFKQSINLTVFNLNLVPRAKHNKNLTVVNWVSFAGRLFFKLE 188
           Y ++KQS++  V+NL  +   K N   T+++ +    +LFFKL+
Sbjct: 314 YAQYKQSLSTEVYNLKTLRLTKRNLRGTLIHLLRSLKQLFFKLK 357


>UniRef50_Q85FG2 Cluster: O-succinylbenzoic acid-coa ligase; n=1;
           Cyanidioschyzon merolae|Rep: O-succinylbenzoic acid-coa
           ligase - Cyanidioschyzon merolae (Red alga)
          Length = 332

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 266 WTKQQXQRRSQKILWLKLGDYVRTRKXGLVAQ 361
           W KQQ  RR Q  LW+K+GD       GL  Q
Sbjct: 205 WIKQQQNRRFQHALWIKIGDLGVINDEGLWIQ 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,231,274
Number of Sequences: 1657284
Number of extensions: 10061326
Number of successful extensions: 19435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19429
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)