Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060399.seq
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251     31   0.63 
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    28   5.9  
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     28   5.9  

>01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251
          Length = 158

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 443 PSPDRNFLTTSXGWSDYTTEPTIYSPPFGPPNLXFWSSHSPPILAK 306
           P+P    L  S  W++ +T P   S    PP+   W+   PP LAK
Sbjct: 42  PTPSSRKLEASASWANQSTPPRWLSSASAPPS--SWAPPPPPELAK 85


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 200 ETKVVQTAKYSDTVVISTIEE*WTKQQXQRRSQKILWLKLGDYVRTRKXG 349
           +T + +  K  DTVV+  +E  WT +  + RS K +  K  D VR  + G
Sbjct: 704 KTLIKRGVKEGDTVVVGEMEMVWTDEPSKTRSSKTMNSK-DDSVRWPEFG 752


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 440 SPDRNFLTTSXGWSDY----TTEPTIYSPPFGPPNLXFWSSHSPPILA 309
           SP  + +T+S G + +    TT  T+Y PP  PP   F    +PP  A
Sbjct: 143 SPASSSVTSSSGDACFAAAATTTTTMYPPPTTPPQQQFIRFDAPPAAA 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,478
Number of Sequences: 37544
Number of extensions: 278598
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)