Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060399.seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27380.1 68415.m03302 proline-rich family protein contains pr...    31   0.69 
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar...    30   1.6  
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    28   4.9  
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family...    28   6.5  

>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 395 YTTEPT-IYSPPFGPPNLXFWSSHSPPI 315
           YTT P  IYSPP  PP +    ++SPPI
Sbjct: 55  YTTPPPPIYSPPIYPPPIQKPPTYSPPI 82


>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 294

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 317 LGDYVRTRKXGLVAQMGGNIWSVRWYNQ-TNX*R-WSE 424
           +GD  +    G +  +GGN   V WYNQ TN  R W +
Sbjct: 144 MGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181


>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 422 LTTSXGWSDYTTEPTIYSPPFGPPN 348
           L TS        EP I++PPF PPN
Sbjct: 128 LITSQNEYQRAKEPNIFNPPFYPPN 152


>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 302

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 419 TTSXGWSDYTTEPTIYSPPFGPPNLXFWSSHSPPIL 312
           T+S   S + T P IYS P  PP     +S S P L
Sbjct: 167 TSSSSSSIFPTNPHIYSSPSPPPTFTTATSDSAPQL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,316
Number of Sequences: 28952
Number of extensions: 232071
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)