Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.42 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.8  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   6.8  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  RCDVLLNNYSLLHNNPTMPNVKFYYFPVKAL 145
           R  +LL +   L +N   P + FYY P+K L
Sbjct: 111 RPKLLLKHNLFLLDNIVKPIIAFYYKPIKTL 141


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 530 YRAWQVDLGR 559
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 273 RQAVRPEHRHLQVP 314
           +Q   P++RH Q+P
Sbjct: 337 QQGAAPDYRHWQIP 350


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 86  LHNNPTMPNVKFYYFPVKALGESQRL 163
           LH  PT  N++   +  +A+ ES RL
Sbjct: 50  LHRKPTYNNLQEMKYLERAIKESLRL 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,986
Number of Sequences: 336
Number of extensions: 2176
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)