Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   1.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.2  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 105 CRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRAG 260
           C +   T +   P++  R C      R  KT++  +  G + N  LR + AG
Sbjct: 280 CDSCGGTGTTIPPNSACRSCMGSGTVRERKTVSIDIPPGIDDNTVLRVMGAG 331


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 56  CDVLLNNYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFED 196
           CD +L N+S     P  P V F   P++ + +       Y  +E  D
Sbjct: 354 CDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELLD 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,117
Number of Sequences: 5004
Number of extensions: 36657
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)