Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0553 - 4123634-4123690,4123756-4124469                           29   2.5  
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    28   7.6  
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342...    28   7.6  

>03_01_0553 - 4123634-4123690,4123756-4124469
          Length = 256

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 551 LGRLCVRR-HVRLPXGDAXEARIWSRSTRPSXKP 649
           L RL +R  H+RLP  DA   R+W  +  PS KP
Sbjct: 48  LARLRIRPVHLRLPGTDATTVRVWCPAA-PSAKP 80


>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
            5709679-5709975
          Length = 1214

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 29   LFSFFVPTRCDVLLNNYSLLHNNPTMPNVKFYYF 130
            L S  V  +CD  L  + LLH+ P +  +K  YF
Sbjct: 1105 LVSSLVVQQCDSPLREWRLLHHLPALNYLKIQYF 1138


>03_03_0196 +
           15331604-15331646,15332141-15332260,15334106-15334221,
           15334661-15334749,15334885-15334927,15335567-15335741,
           15335840-15335971,15336046-15336383,15336791-15337129,
           15337293-15337975,15338228-15338807,15339356-15339679,
           15340149-15340262
          Length = 1031

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 399 ANVVQELHVLVDLEGLLVIGPGESVL 322
           AN + E+H+ + LE LL +GP ++ L
Sbjct: 550 ANGINEMHLQIRLEKLLTLGPDDNQL 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,081
Number of Sequences: 37544
Number of extensions: 267744
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)