Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 52   4e-07
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 45   6e-05
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 42   6e-04
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)                  28   7.7  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQ 253
           MP+ K YYF  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQ 52


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 74  NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TP 244
           N SLL   P MP+ K +YF  +   E  RL  A  G E+ED R    E W   KP+   P
Sbjct: 14  NISLLPF-PKMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPP 72

Query: 245 FGQ 253
           FGQ
Sbjct: 73  FGQ 75


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 104 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 232
           MPN K  YF  +   E  RL  A GG  +ED R++ E W + K
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMK 43



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 PVLEIDGKQYAQSTXICRYLGRKYGL 333
           PVLE+DG QY +S  I R   +  GL
Sbjct: 54  PVLEVDGIQYCESMAIFRLAAKLAGL 79


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 125 YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK----PKTPFGQSRC 262
           YF V+A GE  R+LL      F + R   E+WP  K    P   + Q+RC
Sbjct: 95  YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVKSSLAPSDDYLQARC 144


>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 289 QSTXICRYLGRKYGLAGANDEEAFEID 369
           QS  I RY+GRKY + G  +EE   +D
Sbjct: 19  QSNAILRYIGRKYDMCGKTEEEKVIVD 45


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 113 VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 238
           V  +YF  +   E  RL++   G  + +   + E+WP  K K
Sbjct: 54  VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


>SB_5046| Best HMM Match : GST_N (HMM E-Value=2.5e-05)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 53  RCDVLLNNYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNR 202
           R  V L +Y +       P+  F     + LG+  RLLL Y  ++FED R
Sbjct: 168 RLKVKLRSYGISGATLRWPDA-FLAHRCQKLGQPIRLLLKYTNEDFEDKR 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,664
Number of Sequences: 59808
Number of extensions: 287626
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)