Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 74  NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLA 172
           ++ L HN+   PN+  YY    AL     +L A
Sbjct: 302 HWQLPHNSTNPPNILLYYRDSLALSVFALILTA 334


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 130 PRQGPRREPEAAAGLRRP 183
           P    RREPEA  G  RP
Sbjct: 112 PHPRLRREPEAEPGNNRP 129



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 130 PRQGPRREPEAAAGLRRP 183
           P    RREPEA  G  RP
Sbjct: 138 PHPRLRREPEAEPGNNRP 155


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 588 GSRTCRRTQSRPRSTCQARYDR 523
           G R+C R +SR       RYD+
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQ 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,915
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)