Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060398.seq
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41680.2 68418.m05065 protein kinase family protein contains ...    29   2.7  
At5g41680.1 68418.m05064 protein kinase family protein contains ...    29   2.7  
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    29   2.7  
At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At1g51560.1 68414.m05803 expressed protein                             28   6.3  

>At5g41680.2 68418.m05065 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 333

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 262 APALTERSLRFEFWPVFR*NAIVFELLAAVSQQQPLALAEGLD 134
           AP +T+     +F  V+    ++ ELL   S   PL+L E +D
Sbjct: 222 APEITDTRKSTQFSDVYSFGVVLLELLTGKSPASPLSLDENMD 264


>At5g41680.1 68418.m05064 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 359

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 262 APALTERSLRFEFWPVFR*NAIVFELLAAVSQQQPLALAEGLD 134
           AP +T+     +F  V+    ++ ELL   S   PL+L E +D
Sbjct: 248 APEITDTRKSTQFSDVYSFGVVLLELLTGKSPASPLSLDENMD 290


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 174 TAARSSKTIAFHLKTGQNSNLRLRSVRAGAGDRRQAVRPEH 296
           TA R+ +T             RL   + GAG+RRQA  PEH
Sbjct: 133 TAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEH 173


>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 743

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 498 TQ*ELTKNNGHIALGKLTWGDFVYAGMYDYL 590
           T  +L+ +NGH++LGK   G  +  G   YL
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYL 174


>At1g51560.1 68414.m05803 expressed protein
          Length = 392

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 72  TIIHYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNL 236
           T ++ C I +   T  +  +P+ P A +   CWL  +++ + I   ++ G N  L
Sbjct: 7   TSVYVCNIPK---TKKAFFNPN-PPALSSSSCWLCNSQAKQIIKLRIREGSNQGL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,766
Number of Sequences: 28952
Number of extensions: 202084
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)