Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3CEW6 Cluster: Putative uncharacterized protein; n=1; ...    37   0.37 
UniRef50_A3I3A0 Cluster: Sensor protein; n=1; Algoriphagus sp. P...    33   6.0  
UniRef50_A0BJK9 Cluster: Chromosome undetermined scaffold_110, w...    33   6.0  
UniRef50_Q15532 Cluster: SSXT protein; n=56; Euteleostomi|Rep: S...    33   6.0  
UniRef50_Q3W048 Cluster: Integrase, catalytic domain; n=10; Fran...    33   8.0  

>UniRef50_A3CEW6 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 278

 Score = 37.1 bits (82), Expect = 0.37
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 DWGWRLHDWTKTGSSLQSSRGRSPPSDEMAKR 280
           D GWR H WT+      + RG+SPPS  MA R
Sbjct: 148 DGGWR-HGWTRRRRMAPTGRGKSPPSSSMATR 178


>UniRef50_A3I3A0 Cluster: Sensor protein; n=1; Algoriphagus sp.
           PR1|Rep: Sensor protein - Algoriphagus sp. PR1
          Length = 447

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 302 WTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVRISGDDM 436
           W  L   L   I+N++  IS L+G  +GD+  K   +  +S  DM
Sbjct: 221 WQNLVKILTHEIMNSIAPISSLAGTIKGDIESKMDEISPVSPSDM 265


>UniRef50_A0BJK9 Cluster: Chromosome undetermined scaffold_110,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_110,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 572

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -1

Query: 364 DADRFQGIENSLIKRIL*LSPVILQFSQSFCHFIRGG*PTSGGLKAG 224
           + ++  G ++SLIKRI   +PV+  F   + HF RGG   + GLK G
Sbjct: 325 ELNKENGKQSSLIKRIFNQNPVLCMF---YFHFYRGGGLYNCGLKVG 368


>UniRef50_Q15532 Cluster: SSXT protein; n=56; Euteleostomi|Rep: SSXT
           protein - Homo sapiens (Human)
          Length = 418

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 195 GDYMTGQRPVPAFNPPEVGHPPLMKWQNDW 284
           G++M GQR +P + PP+ G P     Q D+
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDY 270


>UniRef50_Q3W048 Cluster: Integrase, catalytic domain; n=10; Frankia
           sp. EAN1pec|Rep: Integrase, catalytic domain - Frankia
           sp. EAN1pec
          Length = 618

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 161 NWIDKGGSDWGWRLH--DWTKTGSSLQSSRGRSPPSDEMAKR 280
           N I+    +W W  H  +WT T    +S RG +PP  + A R
Sbjct: 539 NTINNYVKNWNWDAHPFEWTXTAEEHRSQRGGTPPGIQEAAR 580


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,657,783
Number of Sequences: 1657284
Number of extensions: 12291996
Number of successful extensions: 33644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33632
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)