Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.9  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.9  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   2.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 239 SRGRSPPSDEMAKRLGELKNYWTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVR 418
           S+G SP  +E+  RL   +N +    +   +RI+N       + G+ + D+  +++H+  
Sbjct: 308 SKGISPEQEELIHRLVYFQNEYEHPSEEDVKRIIN-----QPMDGEDQCDV--RFRHITE 360

Query: 419 IS 424
           I+
Sbjct: 361 IT 362


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 332 RILNTLKAISILSGDTRGDL 391
           +ILN LK I++    T GDL
Sbjct: 319 KILNVLKKIALRRQTTNGDL 338


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 332 RILNTLKAISILSGDTRGDL 391
           +ILN LK I++    T GDL
Sbjct: 245 KILNVLKKIALRRQTTNGDL 264


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 308 ESSNSSVLPIVLPFHQRGVTDLWRIEGWNRSLSSHVIANPSQNLPCQSNFR 156
           ES     + +V   H+  +TDL   E +   + +   ++P ++L    NFR
Sbjct: 202 ESIYEERISVVSGLHEATLTDLALGENYTVQIMAKSESSPFESLKKSLNFR 252


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +3

Query: 522 YRCISQKCQVHHLR 563
           ++CI+Q+C+  H++
Sbjct: 58  WQCINQRCERRHIK 71


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 PYECDNRLYRCISQKCQVHHLRYCYRISRF 587
           P++C+   Y C+++     H++    + R+
Sbjct: 258 PFQCNKCDYTCVNKSMLNSHMKSHSNVYRY 287


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 PYECDNRLYRCISQKCQVHHLRYCYRISRF 587
           P++C+   Y C+++     H++    + R+
Sbjct: 16  PFQCNKCDYTCVNKSMLNSHMKSHSNVYRY 45


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 278  VLPFHQRGVTDLWRIEGWNRS 216
            V+ +  RGV  L  + GWN S
Sbjct: 2384 VVSYKSRGVKVLIALGGWNDS 2404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,567
Number of Sequences: 336
Number of extensions: 2960
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)