Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060397.seq
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    27   2.4  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    27   2.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   3.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   3.1  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   3.1  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   5.5  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   7.3  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.6  

>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 185 DWGWRLHDWTKTGSSLQSSRGRSPPS-DEMAKRLGELKNYWTQLEDPLDERILNTLKAIS 361
           +W   + +W K+    + S      S DE  K   E    W +  D   E +LN ++ I 
Sbjct: 185 EWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDE----WRKSTDERLENLLNIVREIL 240

Query: 362 ILSGDTRGDLSGKYKHLVRI 421
            +  D R DLS   + + R+
Sbjct: 241 DVQRDMRNDLSNLTRKVDRM 260


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 233 QSSRGRSPPSDEMAKRLGELKNYW-TQLEDPLDERILNTLKAISILSGDTRGDLSGKY 403
           Q+S  +   SD+  KR  ++K    T+L+D   E     L  I    GD  G+L  KY
Sbjct: 126 QNSNDQPEESDDKKKRKKKVKEIRATRLDDKTVEEYEFILAQIDNYDGDQLGELMKKY 183


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 320 DPLTESSNSSVLPIVLPFHQRGVTDLWRI--EGWNRSLSSHVIA 195
           DP+ +  +  ++ + L  H+ GV  +W+     W++ LS   +A
Sbjct: 768 DPIVKEQDIYLILVTLSTHKNGVLAMWKFATSNWDKLLSRLPVA 811


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 317 PLTESSNSSVLPIVLPFHQRGVTDLWRI 234
           P+TES    + P   P+  +G+T  WR+
Sbjct: 174 PITESKAIELSPSDAPYITKGLTQCWRL 201


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 326 QEDPLTESSNSSVL-PIVLPFHQRGVTDLWRIEGWNRSLSS 207
           Q D  +E   SS+L P   PF    +TD   IEG   S +S
Sbjct: 614 QVDSQSEYKESSILAPSNPPFETESITDSTEIEGIKESFAS 654


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 302 SNSSVLPIVLPFHQRGVTDLWRIEGWNRSLSS-HVIANPSQNLP 174
           +NSS   ++  FH+ G   +W I    RSL S  V+ +  +N P
Sbjct: 195 ANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSRKENSP 238


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 239 RIEGWNRSLSSHVIANPSQNLPCQSNF 159
           R + W+RSLS+++  + S + P  S+F
Sbjct: 113 RKKSWSRSLSNNISLSQSSSSPATSSF 139


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 254 VTDLWRIEGWNRSLSSHVIANPSQNLPCQS 165
           + D+WR EGW R   S +  N  + +P  S
Sbjct: 329 IRDIWRSEGW-RKYYSGMATNFIRTIPASS 357


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +3

Query: 63  LVCDCEYPPLKRNYQLIYPIMASHSLDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFNPP 242
           L+C  E   LKR  + I     +  LD++ L    LT  + T V ++  G   +  F   
Sbjct: 459 LLCCKEMSTLKRQARSISMNKKTKRLDSLQLKGRILTSNITTVVPNHHMGSYAIQIFWRG 518

Query: 243 EVGHPP-LMKWQNDWEN*RITGLS*RILLMREFSIP*KRSAS*AETP 380
           +  H   ++K +N+  +     +  R+L   E   P K   S A TP
Sbjct: 519 DPQHESFILKLRNEESHKLWMSVLNRLLWKNEHGSP-KDIRSAASTP 564


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 290 LKNYWTQLEDPLDERILNTLKAISILSGDTRGD 388
           L N+   L+  +DERI N L       GD + D
Sbjct: 355 LSNFTLSLQKEIDERIRNLLFVSLSSGGDNKND 387


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 275 KRLGELKNYWTQLEDPLDERILNTLKAISILSGDTRG 385
           K L E K  + ++E  LD+R+  T   +S L GD +G
Sbjct: 719 KNLSEAKPIFDEIE-LLDKRLSETKTELSDLQGDLQG 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,390
Number of Sequences: 5004
Number of extensions: 50253
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)